RNA id: XM_036939746.1


Basic Information

Item Value
RNA id XM_036939746.1
length 1389
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110486469
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43515422 ~ 43518265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATTGTCCTTCGTACACTCTTAGTGTCTCATATGATTTTTAAGATAAAACCACACCCAACTCAGCTTCTGATTAACACCAGAGATGATTTCCTGTCACAGTCAGGAATCAGTTGAATCATATTTGATCAGAGGCTAAAGTAGAAGCACAGAGCTAATCTGTGGCCAAGGTGAGAGAGTGAAACCTGAATGCATGCTCTTTGTCTCCCTCCACAGCTGCTTTGCCGAGTTACATCAGGCCAGGCTTTCTGGAGGCACTGTTAATGCTAAGAACAAGGAAAATAAGAAAATCCTACAAACAGTCAAGCGCTGTCTTTCCGTTGTCAATGAGGACTATGAGGACGACAATGAACAGGTAAGATATTATTTGCTAAAAGACTCACTTAACAATAAACCTGGGACACGTGACAGTGTTTTTCCCCAGCTCTGTTTCAGTTGTAGTTGTTGATGTATTTTCTGCttctttcccattcttctcttagGATGCCCATGAATGTGTGTTGCTCCTCCTCTTTCAGCTGAAGGAGGAGGGTATGGCATTAAAGGGCTCACCAGAGCCATACACCTGCCCCGTGAAGCAGTTAGAATTCAAGCTGAAGACTTCCCGTACCTGCACCAGCTGTGGAGTTATAGTGTATGGTCAGGAGGATTACAATCACTTGTCCCTGAGCCTGAGCCATTACCTGCCACACAGCCTGGACCTCTACTTTAAGCCATCTGCGTTAGAGTGTGCATGCAGGGTGTGCTCAGGCAGCATGGCATCTGTGACTATGCACTTCCTCACGCTGCCCCGGGTCCTAATGCTTCATATCAAGCGATTTACTGCAGGCGACTGGGAGCCAAAGAAGGTGGATGATCCCATGTCCATCCCTGCAGAAATAACCCTCCCAGCCGTATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGCTTCAAATTCCTCTGaccagctagagaaaccagcTGACAGTGAGGAAAAGCAGCAGGCAGCCGctgtgAGACAACAGCCAGACAATATCTACAAATTGTCAAGTGTGATCTCACATCTGGGAGACAACATGTATACAGGCCACTacatcagtgatgttttggacAGCCGTGGCAGTGGGTGGCTCTGCCTGGATGACGCACATGTCTTGAGGACAGATGAGGCCACTGTGCTGAAGGCGATTGCACAGACTGCCTACATCCTGTTCTATGTCTGCAGTGGAGCAGGTGAAGGAGACCAGGCCCATCACTACCAGGAGAAGGACCAGGAGAACCCATCATTAAACTCAGGGAGAGGCACAGCGCTCAGGGAACACCTGGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342818 lncRNA downstream 20394 43480014 ~ 43495028 (-) False G1177513
TU1342810 lncRNA downstream 42279 43472643 ~ 43473143 (-) True G1177509
TU1342808 lncRNA downstream 43181 43471406 ~ 43472241 (-) True G1177507
TU1342498 lncRNA downstream 107051 43407998 ~ 43408371 (-) True G1177237
TU1342422 lncRNA downstream 153154 43354300 ~ 43362268 (-) False G1177175
TU1342847 lncRNA upstream 35110 43553375 ~ 43554655 (-) False LOC118938075
TU1342861 lncRNA upstream 63610 43581875 ~ 43642074 (-) True LOC118938078
TU1342872 lncRNA upstream 91120 43609385 ~ 43624534 (-) True G1177553
TU1342869 lncRNA upstream 96669 43614934 ~ 43647736 (-) True G1177552
TU1342851 lncRNA upstream 102684 43620949 ~ 43622157 (-) True LOC118938075
XM_036939745.1 mRNA downstream 13127 43500814 ~ 43502295 (-) True LOC118938072
XR_005035557.1 mRNA downstream 14693 43499800 ~ 43500729 (-) True LOC118938304
XR_005035555.1 mRNA downstream 25829 43487102 ~ 43489593 (-) True LOC118938302
XM_036941165.1 mRNA downstream 28322 43485682 ~ 43487100 (-) True LOC118938297
XM_021559457.2 mRNA downstream 153183 43355729 ~ 43362239 (-) True LOC110487544
XM_036939747.1 mRNA upstream 16352 43534617 ~ 43535764 (-) True LOC118938073
XM_036939749.1 mRNA upstream 36237 43554502 ~ 43556343 (-) False LOC118938075
XM_036941163.1 mRNA upstream 37839 43556104 ~ 43558397 (-) True LOC118938296
XR_005035556.1 mRNA upstream 61823 43580088 ~ 43580855 (-) True LOC118938303
XM_036939750.1 mRNA upstream 75609 43593874 ~ 43596247 (-) True LOC118938076
TU1342499 other downstream 100319 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 153068 43355719 ~ 43362354 (-) True G1177175
TU1342419 other downstream 153154 43352501 ~ 43362268 (-) False G1177175
TU1342420 other downstream 153154 43355719 ~ 43362268 (-) False G1177175
TU1342276 other downstream 439069 43059430 ~ 43076353 (-) True G1177047
TU1342871 other upstream 83098 43601363 ~ 43616008 (-) False G1177552
TU1343088 other upstream 455274 43973539 ~ 43974057 (-) True G1177709
TU1343092 other upstream 458882 43977147 ~ 43983567 (-) True zgc:158403
TU1343292 other upstream 509047 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 944689 44462954 ~ 44463226 (-) True G1178281

Expression Profile