RNA id: XR_005035551.1


Basic Information

Item Value
RNA id XR_005035551.1
length 2151
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118938298
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43627564 ~ 43629976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttaggtagcctgttttcctttgtgttttgtgggtggttattttcagtctaaTATCCAACCTTTCTGAccgacaagctgtcttcatcagcgTATACTGTTAGGAGCACCTTAACACAGATGGATCTATTAATCTCTGACCGTACCTCATTGAAAAGGTGCCACTCTGCCTAGTGACTGTAAACTAAACAAAAATACTAACgtgGACACCCTGACCCTGGAGCTTGTGGCAGAGCGCAGCATGGCCCAGAAGAGTGAGAATGCGCGCCAGCAGCTGGAGAGGCAGAACAAGGACTTGCGAGCCAAGCTGGGCGAGCTGGAGGGTTCCGggagccccccccccacacacacacaaacagttgtgTATATTGGCCAAATTGATGGTCCTCGTTACTAATACCTCTCCTGGCCCCCTCTGTCCCCTGCAGGCGTGGAGGCCCCATCAGTTTCTCCTCCAGCCGCTCGGGCAGGCGTCAGCTGCAGGTGGAGGGGACATCGCTCGACCTCCTATCCGACGATGAGGTGGAAAACAAGACCACGGACGCCAATGCCAACGAGACGCCAGCAGCTCCCCAACCAGAGTAGACGCGCTCCCTACAGCCCAAAAGCAGCATGGCCTCCGCCCCCACAAACCTTACCCCTGTCCTCCTAACCCCAGACACCAGCAGTGGACCCCACTACTCTGCCTTACCCCTCTATGGCAAGCTGCAGGGCCAAGCAAATCCATCACCTCCTCCATATGAATATACCGCACATCAAGCCTTGGATTCGTTTTTAATATCAATTGCAGATAAAAGTGCATTTAAATTGCATAGGCGTCTGAGTGTGCATAGGCACTCGAAAACAAATAGCAGGAGTTTACCATAATTATGTAAAGCTACTTCCCTGGAACAGCCATTAGAATCAAGCAGCACTCTAGCTAGAATTAACCACTGTCATTTCAGCTGGTTTACTGGCACACAGGTGGACGACTGCACACAAGTCGGTAAAAACATGTGTCTTTCATGATTGTACAGTATTGGACCAGGATATGTAAAACAAAGCACAGCATAAGCGAGGGAATTATTTTTAAATGGTAGCCTAAATGACGATCACACCAAATTTTTTTCATCAAAACCACCACTGTCATAGAGATACTGCAATCCACTTAGTTTAGTATAAAAATAACTATGTGAATAACTCTTTGGTAGCAGGTTTGTAGTGAGTTAGATTGTACCATGCCATGTTGCCTCAGCATTCCCCCTATATATATGACCAGCAAAAGACCCTGTTAACTTTACCAATATAACCTTGTCCAATAACCCaccattttatatttgacatatcAATCTACTTTAAGTGGTGTACGATAATGTGTGGAATTAGGTTTGTCAGACTTGGAGCAAAGGCCCTTTTTTTTAGAAAGACAGCCCAAATGTGTGCTTGACATACTATAATATTGCTATGTATAATTCTGGCTATTCAGTTATGTTTTCTGTACCATGTACAAAATACTTAACTCAAAAAGGTCTCTTTGACATCTCGTGTCACCTTAATTTCAATGCATTTCAAATGGCTGAATAAAATTAGCATGATTTACAGAAGGGTAATTCATCTTTTATTGAAGTTTTATTGAGTGTTAGAGCGTTGGTTTTAATTCAGTGGTTCAGGGTAGAGCAATCAATCAATTTGAATATGCACACTTGTTGATGCCTTGATTATTAAATGTTAAACATAAATGaccattttgtaaatgactaatTACATATTTGAggcctttattattattttaagccagaacaaattgggggaaaaaaggttTATCTGTTTCTTTTGAAAGACACttctcaataaagacatgaagGGGAAAAAAGTGTATAGTGTTTGAACCAGTTTCATAGCTTTAGTGTCATATTATACCATAATCACCTCTCCCATCGTGTTGGTGTGAACCAGTGTTATAACAGAATGATTTATGGAGCCTTCTGTCTGCCAGGCAGAAAGTAGAATTTCATTGGGTTcaaagctttaacatcctgaagGTTGTTATTATTAGTAGACTGGCTGTTGACGACCAGGTATTCATTATCTCCTTTTATTTCTTGTATTTCtagactttttttgttgttgttgtaaaagaCCAATAAACATATCCATtatagaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342526 lncRNA upstream 198882 43428092 ~ 43428682 (+) True G1177263
TU1341830 lncRNA upstream 240933 43386265 ~ 43386631 (+) True G1176657
TU1341809 lncRNA upstream 265337 43359788 ~ 43362227 (+) True G1176637
TU1341764 lncRNA upstream 280167 43343348 ~ 43347397 (+) False LOC110486461
TU1342517 lncRNA downstream 30801 43660777 ~ 43662323 (+) True LOC118938305
TU1342613 lncRNA downstream 147478 43777454 ~ 43778795 (+) True G1177344
TU1342649 lncRNA downstream 193672 43823648 ~ 43871199 (+) False G1177379
TU1342648 lncRNA downstream 203446 43833422 ~ 43868905 (+) False G1177379
TU1342661 lncRNA downstream 207304 43837280 ~ 43863861 (+) False G1177379
XM_036941161.1 mRNA upstream 11512 43599645 ~ 43616052 (+) True LOC118938295
XM_036941160.1 mRNA upstream 38024 43585733 ~ 43589540 (+) True LOC118938294
XR_005035552.1 mRNA upstream 52418 43572784 ~ 43575146 (+) True LOC118938299
XM_036939748.1 mRNA upstream 85858 43537650 ~ 43541706 (+) True LOC118938074
XR_005035553.1 mRNA upstream 103893 43521259 ~ 43523671 (+) True LOC118938300
LOC118938079 mRNA downstream 13962 43643938 ~ 43647438 (+) True LOC118938079
LOC118938305 mRNA downstream 29390 43659366 ~ 43660960 (+) False LOC118938305
LOC118938080 mRNA downstream 43311 43673287 ~ 43676319 (+) True LOC118938080
XM_036941169.1 mRNA downstream 56424 43686400 ~ 43702747 (+) True LOC118938307
XM_036941170.1 mRNA downstream 102933 43732909 ~ 43735602 (+) True LOC118936423
TU1341841 other upstream 219622 43406168 ~ 43407942 (+) True LOC110486465
TU1341800 other upstream 225284 43397749 ~ 43402280 (+) False LOC110486464
TU1341801 other upstream 225284 43397749 ~ 43402280 (+) True LOC110486464
TU1341730 other upstream 362408 43259175 ~ 43265156 (+) False LOC110485182
TU1341549 other upstream 655353 42965493 ~ 42972211 (+) True LOC110486447
TU1343143 other downstream 488902 44118878 ~ 44121922 (+) True G1177750
TU1343210 other downstream 544408 44174384 ~ 44205570 (+) False LOC110486491
TU1343861 other downstream 1038092 44668068 ~ 44668459 (+) True G1178363
TU1343925 other downstream 1229893 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 1290387 44920363 ~ 44926317 (+) True LOC110485188

Expression Profile