RNA id: XM_036941168.1


Basic Information

Item Value
RNA id XM_036941168.1
length 1421
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC118938306
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43667222 ~ 43670676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtatctatctatctatctatgtatgtatggatggatggatggatgaatggatataTATTGTCCTTCGTACACTCTTAGTGTCTCATATGATTTTTAAGATAAAACCACACCCAACTCAGCTTCTGATTAACACCAGAGATGATTTCCTGTCACAGTCAGGAATCAGTTGAATCATATTTGATCAGAAGTTAAAGTAGAAGCACAGAGCTAATCTGTGGCCAAGGTGAGAGAGTGAAACCTGAATGCATGCTCTTTGTCTCCCTCCACAGCTGCTTTGCCGAGTTACATCAGGCCAGGCTTTCTGGAGGCACTGTTAATGCTAAGAACAAGGAAAATAAGAAAATCCTTCAAACAGTCAAGCGCTGTCTTTCCGTTGTCAATGAGGACTATGAGGACGACAATGAACAGGTAAGATATTATTTGCTAAAAGACTCACTTAACAATAAACCTGGGACACGTGACAGTGTTTTTCCCCAGCTCTGTTTCAGTTGTAGTTGTTGATGTATTTTCTGCttctttcccattcttctcttagGATGCCCATGAATGTGTGTTGCTCCTCCTCTTTCAGCTGAAGGAGGAGGGTATGGCATTAAAGGGCTCACCAGAGCCATACACCTGCCCCGTGAAGCAGTTAGAATTCAAGCTGAAGACTTCCCGTACCTGCACCAGCTGTGGAGTTATAGTGTATGGTCAGGAGGATTACAATCACTTGTCCCTGAGCCTGAGCCATTACCTGCCACACAGCCTGGACCTCTACTTTAAGCCATCTGCGTTAGAGTGTGCATGCAGGGTGTGCTCAGGCAGCATGGCATCTGTGACTATGCACTTCCTCACGCTGCCCCGGGTCCTAATGCTTCATATCAAGCGATTTACTGCAGGCGACTGGGAGCCAAAGAAGGTGGATGATCCCATGTCCATCCCTGCAGAAATAACCCTCCCAGCCGTATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGAGACACCAGCCAGACAATATCTACAAATTGTCAAGTGTGATCTCACATCTGGGAGACAACATGTATACAGGCCACTacatcagtgatgttttggacAGCCGTGGCAGTGGGTGGCTCTGCCTGGATGACACACATGTCTTGAGGACAGATGAGGCCACTGTGCTGAAGGCGATTTCACAGACTGCCTACATCCTGTTCTATGTCTGCAGGTAAGGCTCTAGGCCACAAATTTGAGAAGAATGTCACAAATGGAGTCAATGACGACAATCAGTCCCTTTCACCTGTAATCCCTCTGTATGTGTTATTTTTCAGACATTGTATGTACATGTAAGATCTCCCTGTCATTTCTCATTGAAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342887 lncRNA downstream 4913 43660777 ~ 43662309 (-) True G1177561
TU1342869 lncRNA downstream 19486 43614934 ~ 43647736 (-) True G1177552
TU1342861 lncRNA downstream 25148 43581875 ~ 43642074 (-) True LOC118938078
TU1342872 lncRNA downstream 42688 43609385 ~ 43624534 (-) True G1177553
TU1342851 lncRNA downstream 45065 43620949 ~ 43622157 (-) True LOC118938075
TU1342892 lncRNA upstream 3565 43673334 ~ 43733093 (-) False G1177564
TU1342890 lncRNA upstream 17039 43686808 ~ 43733093 (-) False G1177564
TU1342891 lncRNA upstream 30497 43700266 ~ 43733093 (-) True G1177564
TU1342894 lncRNA upstream 31800 43701569 ~ 43734921 (-) False G1177566
TU1342895 lncRNA upstream 31800 43701569 ~ 43734921 (-) False G1177566
XM_036942622.1 mRNA downstream 11609 43653409 ~ 43655613 (-) True LOC118938552
XM_036939753.1 mRNA downstream 25146 43640511 ~ 43642076 (-) False LOC118938078
XM_036939751.1 mRNA downstream 42687 43623012 ~ 43624535 (-) True LOC118938077
XR_005035554.1 mRNA downstream 56309 43608249 ~ 43610913 (-) True LOC118938301
XM_036939750.1 mRNA downstream 70975 43593874 ~ 43596247 (-) True LOC118938076
XR_005035766.1 mRNA upstream 10663 43680432 ~ 43683000 (-) False LOC118938553
XM_036942623.1 mRNA upstream 10973 43680742 ~ 43683000 (-) True LOC118938553
XR_005035558.1 mRNA upstream 25231 43695000 ~ 43697608 (-) True LOC118938308
XM_036939754.1 mRNA upstream 57463 43727232 ~ 43728256 (-) True LOC118938081
XM_036942624.1 mRNA upstream 77759 43747528 ~ 43750702 (-) True LOC110486471
TU1342871 other downstream 51214 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 252119 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 304868 43355719 ~ 43362354 (-) True G1177175
TU1342419 other downstream 304954 43352501 ~ 43362268 (-) False G1177175
TU1343088 other upstream 303770 43973539 ~ 43974057 (-) True G1177709
TU1343092 other upstream 307378 43977147 ~ 43983567 (-) True zgc:158403
TU1343292 other upstream 357543 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 793185 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 813853 44483622 ~ 44545484 (-) True LOC110485184

Expression Profile