RNA id: XR_005035558.1


Basic Information

Item Value
RNA id XR_005035558.1
length 1192
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC118938308
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43695000 ~ 43697608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCCATGGCTCGCCTTCCCAACCTGTTCAGCAAGAGTAGCACCCAGCTGGGGGAGCAGAGCTGCACAGGCGAGGGCGAAGACAACACCAAGCTCCtcggGTTGCCTAATATTGGCAACACCTGCTTCATGAACTCTGCTCTGCAGTGCCTGCTGGGGCTGCCAGCATTTTGCAGAGACATCCTGAGACAGCAGAATATCTGgagttcctccccctcctctaaacTGCTATGCTGCTTTGCCGAGTTACATCAGGCCAGGCTTTCTGGAGGCACTGTTAATGCTAAGAACAAGGAAAATAAGAAAATCCTTCAAACAGTCAAGCGCTGTCTTTCCGTTGTCAATGAGGACTATGAGGACGACAATGAACAGGTAAGATATTATTTGCTAAAAGACTCACTTAACAATAAACCTGGGACACGGGACAGTGTTTTTCCCCAGCTCTGTTTCAGTTGTAGTTGTTGATGTATTTTCTGCttctttcccattcttctcttagGATGCCCATGAATGTGTGTTGCTCCTCCTCTTTCAGCTGAAGGAGGAGGGTATGGCATTAAAGGGCTCACCAGAGCCATACACCTGCCCCGTGAAGCAGTTAGAATTCAAGCTGAAGACTTCCCGTACCTGCACCAGGTAACAGCTGTCATTTGTATACGGTGTACCTTGATGTCATCATCACATTTGTGAGGAGGTTTAATGTCAGCATAATATGCAGGATACAGAGGTAAAGCATTAAGATAGTGTGTAGAGGATCAAAAGGTTTGTGTTGGATAGCTGATGCATTTCTCTCCGTACTTCTGAAGCTGTGGAGTTATAGTGTATGGTCAGGAGGATTACAATCACTTGTCCCTGAGCCTGAGCCATTACCTGCCACACAGCCTGGACCTCTACTTTAAGCCATCTGCGTTAGAGTGTGCATGCAGGGTGTGCTCAGGCAGCATGGCATCTGTGACTATGCACTTCCTCACGCTGCCCCGGGTCCTAATGCTTCATATCAAGCGATTTACTGCAGGCGACTGGGAGCCAAAGAAGGTGGATGATCCCATGTCCATCCCTGCAGAAATAACCCTCCCAGCCGTATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342885 lncRNA downstream 5207 43660777 ~ 43689793 (-) False G1177561
TU1342887 lncRNA downstream 32691 43660777 ~ 43662309 (-) True G1177561
TU1342869 lncRNA downstream 47264 43614934 ~ 43647736 (-) True G1177552
TU1342861 lncRNA downstream 52926 43581875 ~ 43642074 (-) True LOC118938078
TU1342891 lncRNA upstream 2658 43700266 ~ 43733093 (-) True G1177564
TU1342894 lncRNA upstream 3961 43701569 ~ 43734921 (-) False G1177566
TU1342895 lncRNA upstream 3961 43701569 ~ 43734921 (-) False G1177566
TU1342896 lncRNA upstream 3961 43701569 ~ 43734254 (-) True G1177566
TU1342929 lncRNA upstream 56515 43754123 ~ 43754439 (-) True G1177589
XR_005035766.1 mRNA downstream 12000 43680432 ~ 43683000 (-) False LOC118938553
XM_036942623.1 mRNA downstream 12000 43680742 ~ 43683000 (-) True LOC118938553
XM_036941167.1 mRNA downstream 24324 43667222 ~ 43670676 (-) True LOC118938306
XM_036941168.1 mRNA downstream 25231 43667222 ~ 43669769 (-) False LOC118938306
XM_036942622.1 mRNA downstream 39387 43653409 ~ 43655613 (-) True LOC118938552
XM_036939754.1 mRNA upstream 29624 43727232 ~ 43728256 (-) True LOC118938081
XM_036942624.1 mRNA upstream 49920 43747528 ~ 43750702 (-) True LOC110486471
XM_036941190.1 mRNA upstream 54522 43752130 ~ 43753303 (-) True LOC118938309
XM_036941186.1 mRNA upstream 67359 43764967 ~ 43904877 (-) False LOC110486474
XM_036941184.1 mRNA upstream 67359 43764967 ~ 43904878 (-) False LOC110486474
TU1342871 other downstream 78992 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 279897 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 332646 43355719 ~ 43362354 (-) True G1177175
TU1342419 other downstream 332732 43352501 ~ 43362268 (-) False G1177175
TU1343088 other upstream 275931 43973539 ~ 43974057 (-) True G1177709
TU1343092 other upstream 279539 43977147 ~ 43983567 (-) True zgc:158403
TU1343292 other upstream 329704 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 765346 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 786014 44483622 ~ 44545484 (-) True LOC110485184