RNA id: XM_036941183.1


Basic Information

Item Value
RNA id XM_036941183.1
length 6692
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110486474
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43764967 ~ 43948465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCCGCTCtcattttgttgttgaaatgtgaGTCTGGTTAGACTTCTTTTGCATGGCAGCAGGAGAGATAGGACATGGTATGGCAGATATTTTAGCTGCACATTTTAACAGTGGTCTTGTGGCGGCTAAGATTGGCGGTGAACGACCGGTGTGTGGCAACCCTGGCACAGGAACACTATGGCGAGATCTAGGCATTGTCGCTGAGCGATGTGTAGTGAAGgATGAATTTCATCCCTTCAtcgaggcccttctcccccatgtccGTGCCTTCTCCTACACCTGGTTCAACCTGCAGGCACGCAAACGCAAGTACTTCAAGAAGCACGAGAAGAGGATGACAAAGGATGAAGAACGCGCAGTGAAGGACGAGCTGCTGGGTGAGAAGCCCGAGATCAAGCAGAAGTGGGCGTCACGGCTGCTGGCCAAACTCCGAAAGGACATCCGGCCTGAGTTCCGTGAGGACTTTGTGCTCACCATCACAGGCAAGAAGCCCCCCTGTTGTGTTCTCTCCAACCCCGACCAGAAGGGCAAGATCCGCCGTATCGACTGTCTCCGCCAGGCCGACAAGGTGTGGCGGCTGGACCTGGTGATGGTCATCCTGTTTAAGGGCAGCCCCCTGGAGAGCACGGACGGAGAGCGGCTGGTTAAGTCGCCCCAGTGCGCGAACCACGGCCTGTGCGTCCAGCCCCACCACATCGGCGTGTCCGTCAAGGAGCTCGACCTCTACCTGGCCTACTTCATCCACTCACCAGAATCCGGACAATCAGACAGCTCAAACCAGCAAGGAGACACAGACATCAAGCCACCGCCCAATGGGCACTTGAGTTTCCAGGACTGCTTTGTGACTTCAGGGGTGTGGAACGTGGCTGAGCTGGTCCGAGTGTCACAGActCCAGTGGCCACAGCGTCCGGCCCCAACTTCTCCCTGGCCGACCTGGAGAGTCCCGGCTACTACAATATCAACCAGGTGGCCCTGGGACGCCGCTCCATcacctccaccccctccaccagGACTGAAATGGAGCTTTATGCAAGTCTCCCACGGAGctccaACAAGCGCAAGTCCATTGACGACAGTGAGATGGAGAGCCCGGTGGACGATGTCTTCTACTCGGGCCGCTCCCCTGCGGCCGGCAGCAGCTCCCAGTCCAGTGGCTGGCCCAACGATGTGGACGCAGTGCAGCACCATTTGGCCAGTGTGCAAGAGAGGAAGATAAAGCATGAAAACGATGGCGTGCAGTTTCCTTACCATGGACTCTCCTCGCCTGGTTCTCTTAAGAAGCCGGGGAAATTCGATTTCAGCGCCCTGTCGCAGCAGACGAGGTCGCCTCGCATGGTGTTCACCCACCACCCGCTGCCAATGCTGGCGGGAGTGAGACCAGGGAGCCCCCGTGCCTCAGCCTCTGCCCTGCacttcccctccccctccatcaTCCAGCAGTCCAGCCCGTACTTCACCCACCCCACCATTCGCTACCACCACCATCCTGGACAGGACCCCCTGAAGGAATTTGTGCAGTTTGTCTGCGCTGATGGTTCGGGACAGCCTGGCGGCCAGCTTACTCCACGTCAGGGGCCCCAGCTCCCAACAGGTTTGTCAGCATCGGATCACGGGACAACAACTTTCTAAACATCCCGCAGCAGACACAGTCTTGGTTCCTCTGACATGACCTGTCTGCAAACCAGCGTCTAGAATCTTTCTTTACAATTGGGAATTGAAACATGGAAAACAGAAAAATAACCCACAGGAAATTGCCCAACGATCCTAATGTCTCACATAAAAAGTAAAGCAACCCAGGAAATCTTAGCATGATACTAGTAGGGAAACTCTGGACCCAATTACCTAAACAGACGGAACCCCCCATTTTTAAGACGGGAGGATCATAGGATTTGGGAGAGGCAGAGGACAAGAAGTCATCTCTCACATCCAGCAAAACACGGCAACACAAAAAGAGGAACCTGAAGAGAAAAAAGGTCACATTCTACTTCGGAACAAGGACACATTGTGCAATGGCTGGGAAAAGCAACTATTCAACAGTCAAAAAAACTGACGTAGGAGTGGGGATTGAAATTGAAGGGAACATCCAATCACTCTCTTGAAGGCACAAAACACGGCATCATTTAAATGCGGTACGCTCCCCACTGTcaaatcacccacaaaacaaacCCATTAGGTTCCAGTGAAATACGTAGCAGTCCATGCTACTGTGATGTCTCCCTGTCACTCAACACACTGTCAATTCACCAATATTTCCCAGTCTTATAACCATTGACCTAATCAGCCCCACTACTAACAAGACAGAAACCATGCCAAACATATCCTAAAGGTTGCACTACAAGCTGAATTAACACTAATATCATGTCCACTATTACACCTACATGGCATGGGGGGAAAACAGGCTTACCTAtgattgtattattattattattattagtgaaagagaaaaaaaatggaTATGAGAAGTCTCAGCCCACAGTTCAGCAACACAAGGCCTCCACTCTAACCAGCATCCCAGCAGAAGAACCCAAACCCAAGTAAAGCAAAATGCCCAGTTCACTCTTGCAAAACTACAACCGTGACAATAATCAAGTGCTAAGTATATCCACTTTCATTTGAATGATGAATGCCATttgtaacatatatatatatatatatatatatatatatatatatatatacacacaaacacacaccgggCCCAAGTGGTGTTATTACGTCTATGACACATGCTATTCACACGTTTCCAGTACACTCTTTTTGCCCCTTGTAGTAGACACAGAACCCAACACACATACTTAGTTAAAAACACAGGCCTCTGCTTTAATATCCTGAACTACACAGCTACAGTAGTAATATTCCCTTTTGCacagaattgttttattttttgtttcttCTCTTATTGGACTTGTCCCTCAATTTGTCAGCTTTATAAAATGTTGTGTTTGAATGACAGCACCTTATTGAGAAAAACAGTGGTTGGGAGCGAGACTTCGAGTGGTATTGCCAGGAAGGGTGATTCAGTCAGTGTTCAATACCATGTAGTGAAACAGTGACATTAGGTTGCTGAGGGCCCAGAGCCcacctccctcccatctccccgAAGTTGACCCTTTTTGTTTACACTCCCAGACTGCCCCTGTTCCAAGAGCAGAGAGCCACGCTGCGGAGCAAAATAATGATGTGACATATTTCTTCCCATGTTTGGGAAGGAGAGCCTGGGTTGAAGTCAGAGGTCATATTGAGATGGCAGAGTGCTATGGTCGCCTCTTTTCCCTGACACGATCTCAGCTCCCCATCCTATCCAGCCTGTTCATTCTGTTCAGTCAGCCCTTATAGATCAAACTGCCCTAAAGATACCTTACCAGCCAAAAGTTCAACCTTTTGAAATCAAGAGGGACAAATTTAAATGAACACACTTTGCACAGCGGCACTTGACAAACTCGCATGCAAACGTACAGTATAAGTAGCAGTTACAAGCACCCAGCCCAGGCCAGATTGActgtaaagggaaatcttaattaACATAGGGCAATCTCTGAGGAAACCTTTTGTTTTTAATCATTCACTTTTTATTTGAATTCCTAACATTACTACGATTCAGTTTGAAAGTGATTTTTTTTATTAAGGAACATCAGCTCAAATCACCAACCTCACAAAATAACTGGACTGCCTGGTCATGTACTTCACTGCAGGGAAACAATGTTGCCAGATGGCAACCATCTCATCAGCTTGATAGAGAACTAGCACTGCTGAATAAGAATTATGATGGCTATGGTGATTTCTTTTCTAATCTATGGAAGTGCCTCTGTCCCATTATGCAATTTGTTAAACGTGAATTCAGGTTATTTTTCTCACATATAAGCTAATAGTGAATGGTGGTGAAATGCTATGTCTGGGGAGAAAAACAGTGACAGCTCACTGAATAATTGCAAtcatctttatatatatatatacacatatatttatagatatatacatttttgttttttgcaAAATAAGCTCTGTGGCAGTCTAGTTATTTTTTGAAGCATGGCACAGTGAATTGATGCATCTTAAATATCTGATTAGAGCAAAAGTACCAGTCCCTATACCCACATCTAATAGCATAAAGTGTCCATGGCAAATACTATAGATACATGATTTATATAGCAAACAGTAAAGTGACGTGGTCAAGGGAAATAACAGATTCGATTTtggttattatttttttttttggggggggggggggggggggtattgttgttgaataaaatgtatgtgtgttGATTGAGCCATGTGCAATGCCTTGGGTAGATAAATTGTGTTTGTCTGTTAGAGATTGTTTGAGGGTGTCACGAGAAAAGAGAGGCTAAACCctctattttttttgttttaagtcCACTAGCTCCGGGACTCTAAACACGAGGGCAGACAAAAAAAATCCCAGTCTTTGTAAATTGAaaattaatttgtatttttttcctcattcatttaaaatgttttatttgtaatgATTTGTTTTCTACATCTGGGAGGGCTGAAGGAACAATTTagcaaaacaaaaatatatatcacTAAATTAAACAGGTGCTTTTTACAAAATAAAGTACATTCAAACTCTTATACATAAATAGTAATGAACAAAATTAAGTGTTATCATAAAGCACATTTTAGGAAACATGCATTCTATTTCTCTTTTTGTATTTACCAAGGGGGGAGGGGTTCATTATATGAAAAAGTTGTGATAAAGGCATTTTTCTTCAACCTTTATCCCAGagaaccgttttttttttttttgtttgattaGATGGTTATCCTGACAATGGGATGATGAACTAGTGGAAAAGGCCTGACGTAATGGACATCTGGGCCATGTCAGTATCACCAGAGAACTGACTAAAACATGACCTATTTAACAGATGAATTGCAACTTGCATCCAATTTTCTAAACTGTGGACATGTTTAAAACTGGCCAACCGAAGTAATCAAGTTTGGGACACAGACAAGATCTTCCCCATTTTGGGAGATGCATCAGAAATGGAATCCATTTTTCTAAGTGTTAGCTCAACCACAAAGTGATTAATAGCATTTGGAGAGATGGGAGGTGTAACGCGAAATACATTTTGGTAGATTTAGTTGATTCCTATCTCAAACCCAAACAAGGCGAGGGAGTGTAAGGTATATTTTGAGCACAGCAAGGATGAGAGCAGGATTAATTCAAAGAAGTGAACCCTTCCACTCCCAATCCGCAGTGTAAATGATTCTAAATATTTGTTTGGTGATGTAGTGTTAGAATCAGAGCATCTTAAAGGTTGTCCCTAAAAAGTGCCTTTTGTTCACAGACTCCATCTTGTAATCCTGAGTGCCCGTCTCAAAAAAGTCCCCTCCTTCATATTTCTTCTATATCCTCTCCTTCTTCAAGCTTTTCAAAGCAGTATATATAGTACTAAAGGAAATTGGTGTGATTTAGTTATTTTTATTGTTGAATAAttaagaaaagcaaaaaaaataaaaaatatatgtctTGCTTCTCTTCCTGTATCTTGTCTTCTGTCTCTCTTGGACACTGGAGTAGTCTGTAGCTGCGTTACCCTCCTTATCCCTCCCCAAACCCCTTTTCTCTGAATTGAGGGGTAAAAAAAAGCTAAACTTTGTCTGAGCAGAATGCAGTTAGCTCACGTTTTTCTTGTTTGTACGCTTCACATTGTATACCATACCGATCTCTTCAGCTTCTCCATTGAACAGTTAATGTAAGTGAACAAGTTACACCGGGTGGGCTCTTGGGGTGTGGCGAGGAGAGGGTCTGTGAGGGCGCCTAGTTTTTCAGTGGGATGTATTTGATGACATATCACAACGTGGAGATAAAATACACATCGGAATATCCCTCTGAATGGGCAAGGGGGCTGCATGGCAACTGGGGTAGAATAGGCAGGTTTGGTTAATTCTTGTTAACCATTTTTTTTTTCCAGATTTGAGTTGCGTATCTCAATGCTACATTGAGACCGTTTAATGATGCACCTTTCTAGAGGTTGTATGAGACCAGCTATTAAAACAAGTGAAAAAGGACCTGAAATGACTAAGCGTTCTTATAACTGAATGGTTCCATCCCACGTAGACTGGCAGGCTCAGATCCACAatcaagagaaccgttacacccATTTACTAGAACCCCAAATGAACAGTGAGAACAATTACAGACTAAAGTCATATGTAGTAGACAGTTAAAGCACCTTGAAATTCCACCAGCAAAATCAAGAGCAGGCTTGATAGAGGGCCTACTTGTTTCCTACAAGAATATGCATGTTTTTATTGTAAGTGATTGAAGCCAGCAGCAGAATTAGCCTTGACAATTAAAGCGCCCCAGTCGAGAAGCCAGAGTGACAGGTTTCAGTGTGTGCGTTGCTTGGGCAGAACTTTGGTTCCTAGCTATCTTGCCCTGCAGCACCAGAGTTGTCTCTCCCTGGCCACCCGTCGTTTTAATTTTCCTTCAGGTTTGTTTTTAAAAGTGCGTAGGGCcatgtttagtgttgtgtagagtgAACCCCCAGCTGGCCTTGCCCTCCACCCCCCTCAGTGCAGCTTCCCTCCCTCAGGAATACACCTCCCAGAGCCCATGGTGAAATGCATGTGTTAATTACAGTTTCTTTTCCATAATAATAAAAACAGTTTGAAAAGAGCAACACTTGAATAAAAGGATGTTTTTGACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342929 lncRNA downstream 10528 43754123 ~ 43754439 (-) True G1177589
TU1342894 lncRNA downstream 30046 43701569 ~ 43734921 (-) False G1177566
TU1342895 lncRNA downstream 30046 43701569 ~ 43734921 (-) False G1177566
TU1342896 lncRNA downstream 30713 43701569 ~ 43734254 (-) True G1177566
TU1342891 lncRNA downstream 31874 43700266 ~ 43733093 (-) True G1177564
TU1343084 lncRNA upstream 68262 43973148 ~ 43973355 (-) True G1177707
TU1343102 lncRNA upstream 90868 43995754 ~ 43995962 (-) True G1177719
TU1343300 lncRNA upstream 109686 44014572 ~ 44014850 (-) True G1177897
TU1343311 lncRNA upstream 159265 44064151 ~ 44064964 (-) True G1177907
TU1343327 lncRNA upstream 211154 44116040 ~ 44118663 (-) False LOC110486490
XM_036941190.1 mRNA downstream 11664 43752130 ~ 43753303 (-) True LOC118938309
XM_036942624.1 mRNA downstream 14265 43747528 ~ 43750702 (-) True LOC110486471
XM_036939754.1 mRNA downstream 36711 43727232 ~ 43728256 (-) True LOC118938081
XR_005035558.1 mRNA downstream 67359 43695000 ~ 43697608 (-) True LOC118938308
XM_036942623.1 mRNA downstream 81967 43680742 ~ 43683000 (-) True LOC118938553
XM_036941193.1 mRNA upstream 73898 43978784 ~ 43991275 (-) False zgc:158403
XM_021558105.2 mRNA upstream 73898 43978784 ~ 43992082 (-) False zgc:158403
XM_036941191.1 mRNA upstream 73898 43978784 ~ 43992084 (-) False zgc:158403
XM_036941194.1 mRNA upstream 73898 43978784 ~ 43992085 (-) False zgc:158403
XM_021558106.2 mRNA upstream 73898 43978784 ~ 43992246 (-) False zgc:158403
TU1342871 other downstream 148959 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 349864 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 402613 43355719 ~ 43362354 (-) True G1177175
TU1342419 other downstream 402699 43352501 ~ 43362268 (-) False G1177175
TU1343088 other upstream 68653 43973539 ~ 43974057 (-) True G1177709
TU1343092 other upstream 72261 43977147 ~ 43983567 (-) True zgc:158403
TU1343292 other upstream 122426 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 558068 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 578736 44483622 ~ 44545484 (-) True LOC110485184

Expression Profile