RNA id: TU1343092


Basic Information

Item Value
RNA id TU1343092
length 2908
RNA type TUCP
GC content 0.40
exon number 3
gene id zgc:158403
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43977147 ~ 43992248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAATAACCACTCTTATAATATCACCAAAAGAGAATGGATAAAGACTGATTCTACACGCATTCTGCTTGAGCCTGTGTTGATGAGTAATTTTGAATGCATGGTTTTATCATCTGTGTTTTGTTTTGGAAGTGAATGAGTATTCAATGGATGACCGCTGTGTGATCCACCTACTGAAGGGGCTGTGTCTGAAGAACCAGCGACACATTCAGGCTGCAGAGGAATGCTTCAACAAGGTGTACAACAGTGAGAAGAAGATCAAGTTTGACCATTACCTAGTGCCCAACGCTCTGCTGGAGCTCAGTGTGGTCTACATAGACATGGGCCGCAAGGAGGAGGCCATCAAACTACTGGTGAAAGCCAAAACTAACTACAAGGAGTACTCCATGGAGTCACGCACCCAGTTCAGGATCCATGCTGCTCTCTCCAAACTCAAGGCTGACACTAGTGACCAAGATGAAATCACACCACTGTAGTATAACAGGTGTCATTGTGCTGAGCAAGCACTGGACTTGCTTCCCCTGCCATGTGTAGACGTTCCGGGAAGACTTGCTCTCTCATACATCCTCAGCCACTTTGATCACTGCCTCCAAATGTTACTTGCTTTGTGGTGAAAGTCTCCGTCCTTCACGGATGGTGATCTTTCCCTGATTTAAACACTTGAGTTTTGAATGGGAGTTGGTAGAAGTTGCCTCTACCTGCTGGTTCAAGATCAGAGGCATTTTATCCACCTACTGCGTGAACACcctgatcctacatctgtagttagGTTCAGCTTCTATCTTCAGTGTTTGAATGTGTGGTACTTATATCACTGTACTGGTTACCCAGAACAGTAGATTGGGAGGCAGTTGCTCAAAACAATTTGAATATGGTATATCCACAtttttttgtggggaaaaacatgTTGAAATGAACTTATTAACAATGTAAGTTGTGAGGTAGAGTTTTGCTTTTAACTTCTCCAAAAGTGATTGAGTATTACTGTAAGCATTTTGATAAAAGCACCCATTTAGTGATAACTGAGTAAGAcagacataacataacataacgtaTGACATTGCTTTGATCCAAGTTATTTTAACAAATGTATTAACATTTATGTATTAGTAGATGTAGAAGAACCTTAATCAATAGGTCATGctacatttgaagtcagaagtttacatacaccttagtcaaatatatttaaactgtttttcacaattcctgacatttaatcctagtaaaaattccctgttctaggtcagttaggatcaccacttcattttacgaatgtgaaatgtcagaataatagtagagaatgatttcagcttttatttctttcatcacattcccagagggtcagaagtttacatacactcaattagtatttggtagcattgcctttcaattttttttaacttgggtcaaatgttttggacagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagttggtgtaactgagtcaggtttgttggcctccttgctcgcacatgctttttcagttctgcccacaaattttctataggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaacattggaagtatgattggggtcattgtccatttggaagacccatttgcgaccaagcttaacttcctgactgatgtcttgctgttgcatcaatatatccacataatttttcttcctcatgatgccatccattttgtgaagtgcatccttcccagcaaagcacccccataacacgatgctgccagccccgtgcttcacagttgggatggtgtttttctgcttgcaagcctccccctttttcctccaaacataacaactgtcattatggccaaacagttgtatttttgtttcatcagaccagaggacatttctccaaaaagtacaatctttgtccccttgtgcatttgcaaaccgtagtctggcttttttatggcggttttagagcagtggcttcttccttgctgagcggcctttcaggtcatgtcgagatataggactcgttttactgtggctatgtacctgtttcctccagcatcttcataaggtcctttgctgttgctctgggattgatttgcacttttcgcatcaaagtacgttaatctctaggagatcgagtctccttcctgagcggtatgatggctgtgtggtcccatggtgtttatacttgcgtactgtttgtacagatgaatatggtaccttcaggtgtttggaaattgctcccaaggatgaagcagacttgtagaggtctacaatttctgatttttgattttcctatgatgtcaagcaaagaggcactgagtttgaaggtagtccttgaaatagatccacaggtacacctccaattgactcaaatgatgtcaattagcctgtcagaagcttctaaagccatgacattttctggaattttccaagctgtttaaaggcacagtcaactttgtatgtacacttctgacaaactggaattgtgatacagtgaattataattgaaataatattgtctttaaacaattgttggaaaaattacttatgcacaaagtagatgtcctaaccaacttgccaaaacgatagtttgttacaagaaatgtgtggagtgattgaaacacttaggttggagtcattaaaactagtttatgtatacttctgacttcaactgtatgttgtccCTGCTGCAATGTACAGAGGAAAGTAGTCAGTTGAAATAAGTTTAACCTCACTAACCTCTGATATTCATTACTTCAAATAAAGTTTAGACTGTCACTCAAGACCTTGTACAAAGAAAGGCGTGGTTAAAAGATTTGAAAAACATGATTAAATATGTCCATTTGCTACAAGCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343084 lncRNA downstream 3792 43973148 ~ 43973355 (-) True G1177707
TU1343019 lncRNA downstream 96806 43877142 ~ 43880341 (-) False G1177643
TU1343018 lncRNA downstream 96806 43878720 ~ 43880341 (-) True G1177643
TU1343015 lncRNA downstream 98679 43875226 ~ 43878468 (-) False G1177641
TU1343102 lncRNA upstream 12187 43995754 ~ 43995962 (-) True G1177719
TU1343300 lncRNA upstream 31005 44014572 ~ 44014850 (-) True G1177897
TU1343311 lncRNA upstream 80584 44064151 ~ 44064964 (-) True G1177907
TU1343327 lncRNA upstream 132473 44116040 ~ 44118663 (-) False LOC110486490
TU1343331 lncRNA upstream 132473 44116040 ~ 44118663 (-) False LOC110486490
XM_036941173.1 mRNA downstream 28682 43764967 ~ 43948465 (-) True LOC110486474
XM_036941175.1 mRNA downstream 28684 43764967 ~ 43948463 (-) False LOC110486474
XM_036941181.1 mRNA downstream 28685 43764967 ~ 43948462 (-) False LOC110486474
XM_036941187.1 mRNA downstream 28694 43764967 ~ 43948453 (-) False LOC110486474
XM_036941176.1 mRNA downstream 39165 43764967 ~ 43937982 (-) False LOC110486474
XM_021559459.2 mRNA upstream 14885 43998452 ~ 44010678 (-) False tspan35
XM_021559460.2 mRNA upstream 14885 43998452 ~ 44010679 (-) True tspan35
XM_021558107.2 mRNA upstream 33023 44016590 ~ 44021722 (-) False LOC110486478
XM_021558108.2 mRNA upstream 33023 44016590 ~ 44021722 (-) True LOC110486478
XM_021558109.2 mRNA upstream 40486 44024053 ~ 44029014 (-) False epor
TU1343088 other downstream 3090 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 361139 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 562044 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 614793 43355719 ~ 43362354 (-) True G1177175
TU1342419 other downstream 614879 43352501 ~ 43362268 (-) False G1177175
TU1343292 other upstream 43745 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 479387 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 500055 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 529869 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 669505 44653072 ~ 44653468 (-) True G1178763

Expression Profile