RNA id: XM_021558107.2


Basic Information

Item Value
RNA id XM_021558107.2
length 2933
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110486478
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44016590 ~ 44021722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAGACAGCTGTTGTCAAGATGGCGGATGActatggaggagaagagggtccCCTGGACGCTGAAGAAGCTGGGgatcaaataaaatcaattttgAGGCGTTGTAGAGGCCGTCCCAGGCTCACGGATTCTGACCGAGCACAAAGACGCCTCGAGTCCCGCAAGAAGTATGATGTTAGGCGAGTTTATCTTGGAGAATCTCACAAGGTTTGGAGTGAGCTTCGCCGGCGAACGAGTTTGAGTGACGCTGGACTTGCCGAGTACCTAATCCTGCTCAACTCCACGTACGGGGAGAGATACCAGCAAAAATACCGAGGGAAGACAGCCCCAGAAGTATGTACAAAACTGAAAAGAGGGAAAAATGAAAGAGTGTCTAGCCTTTGTAGCATGGTGACCTGGTACCAGGATCACTCCCAGACTTGCCCACATGAACCGCAGCTCAGAGCTCTGGAACCCCAACCTGGATTCTGCACCTCTGCTATCTGGCAGTGTGATGCTGACCATTCATTTGTGCAGCACCTCTCCTCACCACCAAGAGGGGCCAGTGAGCccgagatggagacagagacggaggaggaagTTGATAGTGACACAAGGACAGAGGATACCAGAGGAATCAtgaccaggaggaggaggagagagaccgaTGCCCACAGACAGCTCACTGATGCAGGAGGGGATTTGGAAGTGGCCAGAGCCCCGGTGACTATGGATCAGGTGGAGCAGGCCACGGCTCTCAGCCAGCTCCAAGGGACGGAGGCCCCATCCAAAGACACTCCACTAAGGGAGCATCTCTCTGAGAATCAGTCTGTctgggagatggagatggaggtggtgatggaggcaggcAGACAGCAAGCCCAGGAGTCTGACGAGGAGGAGACCGGTTACAATGCTGTAGGGGAGGACATCAACCcagaggaggaggcggaggaccTGAGAAGAGATGGAGTGGGTACATCACAAGATGGCTATGAGTGTGTTGTAGTGACCGCATCCTTAACTGACAGACTGGACAAAGCCAATGAGCAGGACACCACACAGACAATGGGTGACACAGTTGGTGTAGACACTCAGACCAACctccatccagtcccagcctctATGCAGGTGCCTGGGCAAGGGGAGCTGTTTGAATCTCAGACACTACAGACTGTGGGGACCACCTGTGAGATACCGGACCAGCGAGGAACTCTGGATGGTTCTCAGCTGATCATCATCACTGGCCCCAGCTATGAGGCTTTGGCATCCGAGGGTATCCAGCTCAACATGGGGGGtggagacgtggaggaggtcaCCTGCACTGTCATAGAGGGTGTGGCTTACAACCAAATGTGCCAATCAGTGGCAGACTTTAGGACGACAGAGGAAGAATCCATCACAgATATTTTTCTCTCAGGCCTCAGTGACAAGGAGCTGCTCCAGCCCAGTGTTGAGTCTCATGGCTTGGAGCCCACCTGTGAAAGGGAGCTACAGAGGGGCCTAAGCAGATGTAGAAGGAGCAGACGAGGTCCTGTCATCGAGGCAGACGGAATGCTCAAGATGTTCCACTGTCCGTATGAAGGCTGTAGTCAAGTCTATGTAGCCATCAGCAGCTTTCAGAACCATGTGAATCTGGTTcacaggaaggggaggaccaaggTGTGCCCCCACCCAGGCTGTGGCAAGAAGTTCTATCTGTCCAACCACCTGCATCGCCACATGATCATCCACTCAGGAGTCCGAGACTTCATCTGTGAAACATGTGGGAAATCGTTCAAAAGGAAGAATCACTTGGAGGTTCACCGGCGCACGCACACAGGGGAGACGCCCCTTCAGTGTGAGATCTGTGGGTACCAGTGTCGCCAGCGAGCATCTCTCAACTGGCACATGAAGAAACACACCCCCGAGGCCCACTACAACTTCACCTGCGAACACTGTGGCAAGAGGTTTGAAAAGCTTGACAGTGTTAAGTTCCACAAGTTAAAGAGCCACCCAGACAAACAGGCAACATAAGGCGCAGTGCTGCTGGAATGTGCACTAAATATCAACTGGTCAGGGTCAGACCAGAAAGGGACTGAATCTGTCGACACAGAGAAGAAGAGTGCCCGTAGAGACGGGTATGCCCTTTTGGGGAAAGAGCAGCTCTTTTGAATGAACATTGCTTAGACTCTCTCACTATAATGGACTTTAGAACCTGCTCTCAAAGCTGTGCTGGACACAGCCTTTTTAGAGCTCACAGAGGCAGCCTAGCTGTTGATATTGTACATTTCAGCACAGTTGTTTACATAATGTGCTGTACGcctctaaaccatactgtctctataccatATTATTAACATATCCATAGATTCTctctttttttattcatttttatacCCTTGTCATccacagttgtaatgtacttgttgggaaaaaatgtttttttttgttaattcttgtGTTCTCACGTCAGTACACGAACTGatgcctactggtaaaatgccaAAACTTACATATTCATGGGGAAATTATAATTGCATCTTGAGTAGTAATTGTAACAATGTGCATATGGATGTAAAGGACATGTCAATGGATTCAGAAAGAAGAGTTGTGTTGTCACACAAGTGGGCTGCCTACATTGAAATAGAGAATTGGTCATTTTTGTCATTGACCTGACCAAGGAGTAGTCTTTTTGTGTGAAAGTCTTGCATCATCGTTCAGGTCTGTCTGTTGAACTGTGTGTCTATGAACAGAGTGGTGTTGTATTGTGTACTAAAATGGCAAATGTCGTTTTTGAAAACCTTTTTTTCTAAAGATCCAAAGCAGAATCGCTAATTTATAGTCCTTTTCCTGTTTTCTGTATTACTGAAATGATCAATGTAAAATATGTGAATATGACCAAAATAGACTACATATTTATGGAAGAGACATTTGTTTGAgacaaatgtaaaataaaaaaaaggagTATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343300 lncRNA downstream 1740 44014572 ~ 44014850 (-) True G1177897
TU1343102 lncRNA downstream 20628 43995754 ~ 43995962 (-) True G1177719
TU1343084 lncRNA downstream 43235 43973148 ~ 43973355 (-) True G1177707
TU1343019 lncRNA downstream 136249 43877142 ~ 43880341 (-) False G1177643
TU1343018 lncRNA downstream 136249 43878720 ~ 43880341 (-) True G1177643
TU1343311 lncRNA upstream 42429 44064151 ~ 44064964 (-) True G1177907
TU1343327 lncRNA upstream 94318 44116040 ~ 44118663 (-) False LOC110486490
TU1343331 lncRNA upstream 94318 44116040 ~ 44118663 (-) False LOC110486490
TU1343336 lncRNA upstream 94318 44116040 ~ 44118663 (-) False LOC110486490
TU1343324 lncRNA upstream 94374 44116096 ~ 44118663 (-) False LOC110486490
XM_021559460.2 mRNA downstream 5911 43998452 ~ 44010679 (-) True tspan35
XM_021559459.2 mRNA downstream 5912 43998452 ~ 44010678 (-) False tspan35
XM_036941192.1 mRNA downstream 24342 43978784 ~ 43992248 (-) False zgc:158403
XM_021558106.2 mRNA downstream 24344 43978784 ~ 43992246 (-) False zgc:158403
XM_036941194.1 mRNA downstream 24505 43978784 ~ 43992085 (-) False zgc:158403
XM_021558109.2 mRNA upstream 2331 44024053 ~ 44029014 (-) False epor
XM_021558113.2 mRNA upstream 8233 44029955 ~ 44043512 (-) True rab3db
XM_021558115.2 mRNA upstream 23178 44044900 ~ 44047797 (-) True LOC110486485
XM_021558111.2 mRNA upstream 31575 44053297 ~ 44067701 (-) True LOC110486482
XM_036941200.1 mRNA upstream 50717 44072439 ~ 44086600 (-) False tlcd4b
TU1343092 other downstream 33023 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 42533 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 400582 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 601487 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 654236 43355719 ~ 43362354 (-) True G1177175
TU1343292 other upstream 5590 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 441232 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 461900 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 491714 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 631350 44653072 ~ 44653468 (-) True G1178763

Expression Profile