RNA id: XM_021558111.2


Basic Information

Item Value
RNA id XM_021558111.2
length 2975
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110486482
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44053297 ~ 44067701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAAACGTGTTGCAGAGTGGTCCACAGCCTCACCAGAGCGAGCAAGAACGTTACAGAATCTGAATACTCCTGCAACATCCGCGGGTCTGTCATATCAATTGGAGTCCAGGGAGAAAGAGGACTTTGCTGTGGGTTTTCTCGTGCCAGGATAGAGGGGTGTATTTCACCATTTTTAAATATCCTCTGTGAATAATCAAAGATAACTATGTCAAAGAATTTCAAAGGTGGACCATCCTTCGGACTTTCTGCCGAGGTCAAAAGTAAGTTGGCCCAGAAGTATGACCCCCAGAAGGAGGAGGAGCTGAGGCTGTGGATCCAGGACGTAACAGGCAAGAAGATCGCTGATCCTTTCATGGAGAACCTAAAGGATGGGGTCATCTTGTGCGAACTTATCAACACACTTCAGCCAGGATCTGTGAGAAAGATTAACACTTCCCCTCAAAACTGGCATCAGCTGGAAAACATTGGCAATTTTGTCCGAGCTATCACAGTTTATGGTATGAAGCCATACGATTTGTTTGAGGCCAACGACCTGTTTGAGAATACCAACTACACCCAGGTCCAGAGCACGCTCATCACCCTGGCTGGAATTGCCCAGTCCAAAGGTTTCCACTCCAAGCATGACATGGGAGTGAAGTATGCAACAGCACACCAGCGCCGTTTCGCCCCAGACATGCTGAAGGAAGGGCGCAATGTCATCGGCCTGCAGATGGGTACCAACAAACTTGCCAGCCAGAAGGGCATGACATCTTATGGCACGCGGCGTCACCTGTATGACCCGAGGGGGGGAATGGAGAACCCTCTGGACCAGTCCACCATCAGCCTCCAGATGGGCACCAATAAGGGTGCCAACCAGTCTGGCATGACGGCCCCTGGCACCAGGAGACACATCTATGACAAGAGTCTGGGCTTGGAGGAATGCGACACCTCCACCGTTTCACTGCAGATGGGCACCAACAAGATGGCGTCCCAGCAGGGCATGACCACATACGGCCTCCCTCGGCAGGTCTACGACAACAAGTACTGCTCCAACCCTGATGAATTCGTCAACAACGGAGAGAGGGCTGAGTTTGACGGTACTATGTACTATGACTAAAGAGAACAGAATAACCCCAGTCCCCTCCTCTCAAGAACCCCTCTCCACCAGCAAGACCACCCaaactgttatttactgtttccATTATTCTCGTCCcttgctgtttttttttgttgtgatCAACCATTCAAATCATTTTTGTCCTTTGAGGGGATTCATGCCTGGTTCAATCTCTTTGACCTTGTTATTTTAAATCACTTTAATGTAGTGGcccacacccctctctccctttgcAATGGAGATTTTTCTATTCAAATACGGTGAAAATAAATACTAAGAGATACTAATAATGTCAAGAGACCCATTCCTTAATCAATCTTATTGTaatgtcatttttttattttttttatttttatagtttataaaaatgtatattttcagtTGTAGATCCCCCATCCAGCTTAAACATTGAGAATATAGGAAAAAGTTCCTTGAATGGAAAGAAGTGACCGACATGTTGCTGTTAACCTTTAACCCCTGAGGAACAGGAGTccgctctgggattcaatccctCGGGGCCCACAGAATCAGACGGAGTCTTCCAGGACACAGGGACATGGACTAAAAACTTTGATCAGATGTATTCCTTATGACTTTGCCTGTGTATGCACGTCTGCACTGCGCTGACACCCTGCTCTAGCTCACAGGACTGCCAACCAGCCATTTTATACCACAGATGGATTTTTTTATCTAGTATTCTTTAAATCATTAGAAGATCAGTAGTAGGGTTCTCAAACCTGATACTTGAATTAATGTAAGCCCCTAAAGGCATCGTGAAAAGCCAATAGATTTTAATATTTTTTGTATTATAAGCAGTATTCACACTTCATTAGTGATAAACAATGCAGAATCAATTTTAGCCATTGTGCCAGCTATGTTAATGTGGATGTCACATAGGCCAGTTTGCATGAGACAAGTTATAATCCCTCTATAGTTTCCATGTCACACAGCTTTAATATATTGCTGCGCTATTTGCACTTTGCATCACCTTGTTGAATATGTACATGGATAGAATTACTTATGACTAGAAGGCAGACAAGCCAGGTCGTTGAGAGATCCATAACATCTGCACGCTGTTATACACGAGATAACGGTCTAATTATTGTCCACTTAGTCATAGCTCAATACAGCAGACCCTGTATCACTAACTACTACATGATATGGGGTACCCACCACAGATCTTGAATGTAATGTGATTTTGAGCACTGCAAGATGTGACTGTCATTCTGTGGATTCATTAATCACCTTGTACCAGCAGTCGCAAATGAATAACATAAGTTTGCAACATATTTATGCTTGGGATAATGTAGCCTAGCACAGCTGCTAATGGTTTAAACATTAAACTGTGCATGCTTGACCAAACCTTTGAAAAGCAGGCTTGTTTGCTTGCTAAGAGGTTTGTTCAAGATCATGTCTTGCACCTGGAACGTTCCACAGAACACATCTCTATGCCTTGCATGCTCATGTACAAAGCATGGATTGGTTATGCCTTGTCCACAGACTGCTTACAGTAAGGAAAACAATGTAATTTTTAAAGTTGGGTTTACAATCCATTTAAGTTAAATTTGAAAGGTCTTGATATCAGTTACTGGgcagtattgtaatgtttttttaaataggaGGTATTGGAGATAAATCTACATAAAATATTGAGTCCCTCCTGAGGTTCTGACCTCTGGAATTTATAGTGATGATTTGTCAAACTTTTGAAGGCTTAATACTTTAATTAAAGGGAACATCGTTTGATGCTGAGCCCGTAATAATCTGAAGGCCATGTTGCATTTTCCCCCCTACATTAGTGTGCCATCTAGTGTTTTGAAATCCCTTTAACATTTGGAGAAAAAAACAGACTACATTCCACAGACTTAAGATAAAAG

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343300 lncRNA downstream 38447 44014572 ~ 44014850 (-) True G1177897
TU1343102 lncRNA downstream 57335 43995754 ~ 43995962 (-) True G1177719
TU1343084 lncRNA downstream 79942 43973148 ~ 43973355 (-) True G1177707
TU1343019 lncRNA downstream 172956 43877142 ~ 43880341 (-) False G1177643
TU1343327 lncRNA upstream 48339 44116040 ~ 44118663 (-) False LOC110486490
TU1343331 lncRNA upstream 48339 44116040 ~ 44118663 (-) False LOC110486490
TU1343336 lncRNA upstream 48339 44116040 ~ 44118663 (-) False LOC110486490
TU1343324 lncRNA upstream 48395 44116096 ~ 44118663 (-) False LOC110486490
TU1343328 lncRNA upstream 48395 44116096 ~ 44118663 (-) False LOC110486490
XM_021558115.2 mRNA downstream 5500 44044900 ~ 44047797 (-) True LOC110486485
XM_021558113.2 mRNA downstream 9785 44029955 ~ 44043512 (-) True rab3db
XM_021558109.2 mRNA downstream 24283 44024053 ~ 44029014 (-) False epor
XM_021558107.2 mRNA downstream 31575 44016590 ~ 44021722 (-) False LOC110486478
XM_021558108.2 mRNA downstream 31575 44016590 ~ 44021722 (-) True LOC110486478
XM_036941200.1 mRNA upstream 4738 44072439 ~ 44086600 (-) False tlcd4b
XM_021558118.2 mRNA upstream 4738 44072439 ~ 44087089 (-) False tlcd4b
XM_021558117.2 mRNA upstream 4738 44072439 ~ 44087652 (-) True tlcd4b
XR_005035560.1 mRNA upstream 48339 44116040 ~ 44118243 (-) False LOC110486490
XM_036941201.1 mRNA upstream 53654 44121355 ~ 44169148 (-) False LOC110486489
TU1343292 other downstream 24312 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 69730 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 79240 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 437289 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 638194 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 395253 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 415921 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 445735 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 585371 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 660875 44728576 ~ 44731351 (-) True G1178765

Expression Profile