RNA id: XR_005035560.1


Basic Information

Item Value
RNA id XR_005035560.1
length 2084
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110486490
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44116040 ~ 44118663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgatacttaagtatatttaaaaccaaatacttttagacttactcaagtagtattttactgtgtgactttcatttttacttgagtcattttctgttaaggtatctttacttttactcaagtatgctCATATCTCACCCTCCACTCCCCACTCCCTCCCACTGGCATATGGTTTTCTACCACTGTTTGGTTCTCTTCTTTGTGTTGTATCCTGACTATACCGTCACTGTGCTGTGTAATGTTTCCCTCTGctggacatcacacacacacacgaaaacgCTCATAAGAAAACATACATTTAATATTGACAAACTTACCAAAATACACACACTTTTGGATGTACATACACATACTCACCCAacgaaacaaacaaacacacacactcacttaccTCTCCTAATCTCTAGGCTATACCTCCCCTCTTTTCCACTTTCTTACACTTAAACCTATTTGTATGGTTTTGTAAATAGTAATTTTTTGTAATGAGAATGTGATTTTTACACAGACACCCCACTGCTCTCCTTACATTAAGTTGTTATGGAGAAATGGGAACATTTAATTGTATCAACTTTATTACTGAAGACAAGAGTGTATGTAAAGGTTCTGGTCCACTCTAAATCAGGCCTGGATTGGACCTCTCCTCGTCCCAAACTGGCAGCCATTCTGCATCAAACCAGGTGTCCTCCCGGACCAAGGTTGGAGTCAACCAAAGATGACTCGTGGTTTTATGCTAACAATAGAATCCTCTCATGGTTTAGTTTCTCTTGTAATAGTTCACCTGCCAGCCcatattgggccagtaaccaaaatgttgctgaattgaatccccgagctgacaaagtaaaaatctgtggttctgcccctgagcaaggcagttaacccactcttcctcgGGCAACGATGacatcgattaaggcagcccccccgtgcctctctgattcagagggtttgggttgaatgcattcagcagTACAGATGACTAGgtatccccctgtGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCagtacagctgactaggtatccccctgtGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGATGACTAGGTGTCCCCCTGTGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGATGACTAGGTGTCCCCCTGTGAATGCATTCAGCagtacagctgactaggtatccccctgtGAATGCATTCAGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGCTGACTAGGTGTCCCCCATTCCCTATACACCAAAGTCAGTGAATTAGGACAAAGTGCACTGTATACTACTATCACAATCTTGACGGGGTCTGTtgcttttacattttagtcatttagcagacgcttttatccagagcgacttacagaagcaattgtggttaagtgccttgctcaagggcaccttGTCAtctctgggattcgaaccagtgacctttcagttactggcccagcgctcttaactgctaggccaAAAATGACAGCAGCTACAAAATACTACACAGATGGCTTGATTATGCTTTTGGTCAGAATGTGTGTTCCTTGGTgcacatacaatacaatacatctgCAGTTTGATTTAGTTATATTTTAAAATAATAAGACGATAAATAATGCAGTAACAAAAGAAAAGTGTTCTGAGTTTTAACACTTCATTTCATCTTGTTACAACGTACCTTCTGTTTTGTAAGGATTTGTCTGATGAGAACAATAAATGGATATTGCAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343311 lncRNA downstream 51076 44064151 ~ 44064964 (-) True G1177907
TU1343300 lncRNA downstream 101190 44014572 ~ 44014850 (-) True G1177897
TU1343102 lncRNA downstream 120078 43995754 ~ 43995962 (-) True G1177719
TU1343084 lncRNA downstream 142685 43973148 ~ 43973355 (-) True G1177707
TU1343018 lncRNA downstream 235699 43878720 ~ 43880341 (-) True G1177643
TU1343394 lncRNA upstream 54313 44172556 ~ 44173125 (-) True G1177962
TU1343419 lncRNA upstream 87839 44206082 ~ 44206443 (-) True G1177987
TU1343420 lncRNA upstream 88216 44206459 ~ 44206676 (-) True G1177988
TU1343413 lncRNA upstream 92344 44210587 ~ 44210913 (-) True G1177981
TU1343426 lncRNA upstream 96131 44214374 ~ 44215085 (-) True G1177994
XM_021558117.2 mRNA downstream 28388 44072439 ~ 44087652 (-) True tlcd4b
XM_021558118.2 mRNA downstream 28951 44072439 ~ 44087089 (-) False tlcd4b
XM_036941200.1 mRNA downstream 29440 44072439 ~ 44086600 (-) False tlcd4b
XM_021558111.2 mRNA downstream 48339 44053297 ~ 44067701 (-) True LOC110486482
XM_021558115.2 mRNA downstream 68243 44044900 ~ 44047797 (-) True LOC110486485
XM_036941201.1 mRNA upstream 3112 44121355 ~ 44169148 (-) False LOC110486489
XM_036941202.1 mRNA upstream 3112 44121355 ~ 44169150 (-) False LOC110486489
XM_036941203.1 mRNA upstream 3112 44121355 ~ 44169150 (-) True LOC110486489
XM_021556249.2 mRNA upstream 104290 44222533 ~ 44224572 (-) True LOC110485183
XM_036941205.1 mRNA upstream 177333 44295576 ~ 44311575 (-) True LOC110486496
TU1343292 other downstream 87055 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 132473 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 141983 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 500032 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 700937 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 344711 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 365379 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 395193 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 534829 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 610333 44728576 ~ 44731351 (-) True G1178765

Expression Profile