RNA id: TU1343332


Basic Information

Item Value
RNA id TU1343332
length 2048
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC110486490
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44116040 ~ 44118663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaactttcacaattggtggctgactaaatagttttttgccccactgtaagtagttttttggggtatctgtactgtactttactatttatattttgccTACTTTTACTtgactacattcctgaagaaaattatgtactttttactccatccactttccctgacacccaaatcaTTTTTTATGCTTagtaggacaggaaaatggtcaaattcatgcactaatcaagagaacatccctggtcatccctactgcctctgatctggaggagtcacgaaacacaaatgctttgtttgtaaattatgtgagtgttgtagtgtgcccttggctatccataaattaaaaagatttgcttaatataaggaatttgaaatgatttatacttttacgtttaactaagtatattttagcaattacatttacttttgatacttaagtatatttaaaaccaaatacttttagacttactcaagtagtattttactgtgtgactttcatttttacttgagtcattttctgttaaggtatctttacttttactcaagtatgctCATATCTCACCCTCCACTCCCCACTCCCTCCCACTGGCATATGGTTTTCTACCACTGTTTGGTTCTCTTCTTTGTGTTGTATCCTGACTATACCGTCACTGTGCTGTGTAATGTTTCCCTCTGctggacatcacacacacacacgaaaacgCTCATAAGAAAACATACATTTAATATTGACAAACTTACCAAAATACACACACTTTTGGATGTACATACACATACTCACCCAacgaaacaaacaaacacacacactcacttaccTCTCCTAATCTCTAGGCTATACCTCCCCTCTTTTCCACTTTCTTACACTTAAACCTATTTGTATGGTTTTGTAAATAGTAATTTTTTGTAATGAGAATGTGATTTTTACACAGACACCCCACTGCTCTCCTTACATTAAGTTGTTATGGAGAAATGGGAACATTTAATTGTATCAACTTTATTACTGAAGACAAGAGTGTATGTAAAGGTTCTGGTCCACTCTAAATCAGGCCTGGATTGGACCTCTCCTCGTCCCAAACTGGCAGCCATTCTGCATCAAACCAGGTGTCCTCCCGGACCAAGGTTGGAGTCAACCAAAGATGACTCGTGGTTTTATGCTAACAATAGAATCCTCTCATGGTTTAGTTTCTCTTGTAATAGTTCACCTGCCAGCCcatattgggccagtaaccaaaatgttgctgaattgaatccccgagctgacaaagtaaaaatctgtggttctgcccctgagcaaggcagttaacccactcttcctcgGGCAACGATGacatcgattaaggcagcccccccgtgcctctctgattcagagggtttgggttgaatgcattcagcagTACAGATGACTAGgtatccccctgtGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCGGCAGTACAGCTGACTAGGTGTCCCCCTGTGAATGCATTCAGCAGTACAGATGACTAGGTGTCCCCCTGTGAATGCATTCAGCagtacagctgactagGTGTCCCCCTGTGAATGCATTCAGCAGTACAGCTGACTAGGTGTCCCCCATTCCCTATACACCAAAGTCAGTGAATTAGGACAAAGTGCACTGTATACTACTATCACAATCTTGACGGGGTCTGTtgcttttacattttagtcatttagcagacgcttttatccagagcgacttacagaagcaattgtggttaagtgccttgctcaagggcaccttGTCAtctctgggattcgaaccagtgacctttcagttactggcccagcgctcttaactgctaggccaAAAATGACAGCAGCTACAAAATACTACACAGATGGCTTGATTATGCTTTTGGTCAGAATGTGTGTTCCTTGGTgcacatacaatacaatacatctgCAGTTTGATTTAGTTATATTTTAAAATAATAAGACGATAAATAATGCAGTAACAAAAGAAAAGTGTTCTGAGTTTTAACACTTCATTTCATCTTGTTACAACGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343311 lncRNA downstream 51132 44064151 ~ 44064964 (-) True G1177907
TU1343300 lncRNA downstream 101246 44014572 ~ 44014850 (-) True G1177897
TU1343102 lncRNA downstream 120134 43995754 ~ 43995962 (-) True G1177719
TU1343084 lncRNA downstream 142741 43973148 ~ 43973355 (-) True G1177707
TU1343018 lncRNA downstream 235755 43878720 ~ 43880341 (-) True G1177643
TU1343394 lncRNA upstream 53893 44172556 ~ 44173125 (-) True G1177962
TU1343419 lncRNA upstream 87419 44206082 ~ 44206443 (-) True G1177987
TU1343420 lncRNA upstream 87796 44206459 ~ 44206676 (-) True G1177988
TU1343413 lncRNA upstream 91924 44210587 ~ 44210913 (-) True G1177981
TU1343426 lncRNA upstream 95711 44214374 ~ 44215085 (-) True G1177994
XM_021558117.2 mRNA downstream 28444 44072439 ~ 44087652 (-) True tlcd4b
XM_021558118.2 mRNA downstream 29007 44072439 ~ 44087089 (-) False tlcd4b
XM_036941200.1 mRNA downstream 29496 44072439 ~ 44086600 (-) False tlcd4b
XM_021558111.2 mRNA downstream 48395 44053297 ~ 44067701 (-) True LOC110486482
XM_021558115.2 mRNA downstream 68299 44044900 ~ 44047797 (-) True LOC110486485
XM_036941201.1 mRNA upstream 2692 44121355 ~ 44169148 (-) False LOC110486489
XM_036941202.1 mRNA upstream 2692 44121355 ~ 44169150 (-) False LOC110486489
XM_036941203.1 mRNA upstream 2692 44121355 ~ 44169150 (-) True LOC110486489
XM_021556249.2 mRNA upstream 103870 44222533 ~ 44224572 (-) True LOC110485183
XM_036941205.1 mRNA upstream 176913 44295576 ~ 44311575 (-) True LOC110486496
TU1343292 other downstream 87111 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 132529 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 142039 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 500088 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 700993 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 344291 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 364959 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 394773 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 534409 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 609913 44728576 ~ 44731351 (-) True G1178765

Expression Profile