RNA id: TCONS_00005881


Basic Information

Item Value
RNA id TCONS_00005881
length 897
lncRNA type read_through
GC content 0.42
exon number 2
gene id XLOC_002093
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21917877 ~ 21945344 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCTATTCTGTTCAATTCAATCCGGATTCTCCCTCTTCTGGCCTCTTTGCGAACTAAATCAGCCTCATATTCATCATTGTTAATCTTGATTTTCACTGAAGGCTGCCGATTCTGAAAGGCTTGTTCCAAGTCAAAATTGGTCAACAGGTCAAAGTTTTCGAATCTCTGCCCATTCTCCTGATACTGCCATTTAACTACAGCTCTGATCATTAATGCTTCACGTCTTCTGTTTTCATTTCTTTCCACCTTGCGGATCATGTCCCGAACGCGACTCTCTGCAGTGTGAACGTCTCTTGTCAGACCCTGCAATGTAACGACAGAGTCTTGGCCTTTCTTCTCTAGTTTGAAACTGACTGTAAGTTCCTTCTGCATGGCATTCAGCATTTCTACATCCTCTCTGGTGAAATGAGCAATGGCTGGATCACGGATTGGGTTGGTCAAATGCTCCCGAATTATCAAATTGTTGATCATTTCCTTGGCTTCACTCAAGTCCTGCGGTGTCTCTCCACACAGCTGAAACACAGCCGGCTCAATATCTTCACTCACCATCACAAACTCTTCACTTGGAGGAGTTTCTGAACTTCCCCATGAAAAAAAGTCTACATGTTTGATAGAGAAACAGATAGATTTataatgctttatttttgtttctatttAAACGTATTCACAAAAATTTTACTCTTTACTAACCTTTAAGTTTGGTTAACAGACCTCTATCCTCTTCTACTTTCTCACCAGATCTTCTGACCATACTTTGGTGGAAATGTGACAGCATGCTCGCCTGGAATATAAGGAACTTCACAACCTTTACATGCACCGGTTTCTTCTTCTTCACAAAGTCAACAACTGCATCAACCATTGCATCTGCAACATCACCAGGTTCCGCACCACCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005706 lncRNA upstream 11500 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00004076 lncRNA upstream 49154 21867333 ~ 21868723 (+) True XLOC_002089
TCONS_00004074 lncRNA upstream 49651 21867307 ~ 21868226 (+) False XLOC_002089
TCONS_00005705 lncRNA upstream 172372 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004043 lncRNA upstream 243419 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004082 lncRNA downstream 89257 22034601 ~ 22041604 (+) False XLOC_002097
TCONS_00005883 lncRNA downstream 89257 22034601 ~ 22044758 (+) False XLOC_002097
TCONS_00004087 lncRNA downstream 96186 22041530 ~ 22044758 (+) True XLOC_002097
TCONS_00004088 lncRNA downstream 189189 22134533 ~ 22139340 (+) True XLOC_002098
TCONS_00005884 lncRNA downstream 278859 22224203 ~ 22263265 (+) True XLOC_002099
TCONS_00004077 mRNA upstream 8181 21899753 ~ 21909696 (+) True XLOC_002090
TCONS_00004075 mRNA upstream 47420 21867307 ~ 21870457 (+) False XLOC_002089
TCONS_00004070 mRNA upstream 97744 21801043 ~ 21820133 (+) False XLOC_002083
TCONS_00004079 mRNA downstream 58406 22003750 ~ 22031921 (+) False XLOC_002096
TCONS_00004080 mRNA downstream 67045 22012389 ~ 22031866 (+) True XLOC_002096
TCONS_00004081 mRNA downstream 89133 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004083 mRNA downstream 89257 22034601 ~ 22044632 (+) False XLOC_002097
TCONS_00004084 mRNA downstream 89282 22034626 ~ 22036367 (+) False XLOC_002097
TCONS_00004047 other upstream 97820 21701551 ~ 21820057 (+) False XLOC_002083
TCONS_00004049 other upstream 97820 21708463 ~ 21820057 (+) False XLOC_002083
TCONS_00004046 other upstream 99272 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004062 other upstream 99272 21786656 ~ 21818605 (+) False XLOC_002083
TCONS_00004071 other upstream 105299 21804772 ~ 21812578 (+) False XLOC_002083
TCONS_00004078 other downstream 35203 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004086 other downstream 89817 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004103 other downstream 901928 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 945839 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1472489 23417833 ~ 23417947 (+) True XLOC_002122

Expression Profile

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