RNA id: XM_036941203.1


Basic Information

Item Value
RNA id XM_036941203.1
length 1818
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC110486489
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44121355 ~ 44169150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggaaacAAGTTTTGAATACAAATGAGCTTCTCTCTAGTGGCACAGATAccacacatccctctctctctcttactcacacACGAATACACAATCTTCCACACACGCTGCCTCTCGGTCTGTATTGGAAGACAGCGCAGCACATGCAGTAATTCCCGACACTTAATTGATTAGCCCAGGCTGCTTATTTGAAGTGGCTAATTAGAGGGGGAGTGTGTCGAGTGTGTGAGGAGGGCTGGGGAGTCGCTAGCGCTCTTTATCTCCGTGCGCGTGTGTCTGTCTGAGGAGCTCCAGTACCACGCTTCACTCTGGAGcatcaggaggaggagagaagaagaagagaagagatagagaggcagCTGGGTGGGGAGATTTTCACTACACTTTCCCTCATCTGATATGGCCTCCGCGTAGGAATCTGGTGCCACGGCAACAGAGGAGCTAGGCAGCAGCGAGGTGTCTAAGgtgtgaggagagagagagtgctggagagaggacaggagagagagaacgagagaatgaTGGCGGCGGAGGAGGAGAAGCCGGGTTTGAAGAGCAGCAGCTCCATAGTTCCCTGCTTCTTGTTTGTTGAGCTGGTGATCATGGCAGGGACGGTTCTCCTGGCGTACTACTTTGAGTACACAGACACGTTCCCCGTGCACATCCAGGGCTTCTTCTGCTACGACAAGACGTTCTCCAAGCCCTACCCCGGCCCGGATGACACCAGCAAGATACCCCCACTGCTGGTCTACTCACTGGTTACAGGCATCCCCTGCTTCACGatcCTGGTAGGGGAGCTGATGGCGTTCTTTCTGAAGGCTGAGGGGACGCAAGAGAAGACCATAGTGACAGCAGACTGCTGCTACTTCAACCCCCTGCTGCGACGCATCGTCCGTTTCCTAGgggTGTTCTCCTTCGGCCTGTTCACCACCACCATCTTTGCCAACGCGGGTCAGGTGGTGACAGGAAACCAGACGCCTCACTTCCTGTCTGCCTGCCGGCCTAACTACACGGCCCTGGGGTGCACATCCAACATGCAGTACATCACCCAGCCCCGTGCCTGCACTGGAAACCCCCTGGTAGTGGCATCCGCACGCAAATCCTTCCCCTCCAAGGACGCAGCCCTCAGTGTCTACTCTGCAGTCTACACTGTGaTGTATGTGACGCTGGTATTCCGGACCAAAGGCACTCGGCTGACCAAGCCTACGGTCAGCCTGACCCTGCTATGCCTGGCCATGCTGGTGGGAGTGGTCAAGGTGGCAGAGTACCGCAACCACTGGGCCGACGTCCTGGCCGGCTTCTTCACTGGAGGAGCCATCGCTGTGTTTCtggTGACGTGTGTGATCAACAACTTCCAGCAGACGAggccccctccccttcccccgcGACCCCAGCGCCCTGAGTCGGTGCTAGGCATGCCCATGGTGGCTCTGCCCTGTGTGGAGAGTCCACTCGAAAAGTTAAGTGGAACTCAGaCTCCGAGGGGGTCTCCTTTCACAGAGATCACATGACCATCAGCCGTATCGGTTCCCCGCCACCCCAGATGTCCTCATTCCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCACACGAACATGAACACTCACACGAACACCACTGCGCCGCCCATCCGGCAGGCCGCTACTCCACCCTCTACAGATCCTACTCCACGCAGGTCTAGACTTtcaaaacacacgcacacaaacacaacacacacagcatacTCAGACCTCTACGAACCTCCCCCTAACCTTGTCCAAGCCCAAACCCCTGGGGGAACCGAAAGGTGAGCTCATAAAGTGAGACTCACAAAGA

Function

GO: NA

KEGG:

id description
K19581 LPPR1_2_5; lipid phosphate phosphatase-related protein type 1/2/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343328 lncRNA downstream 2692 44116096 ~ 44118663 (-) False LOC110486490
TU1343394 lncRNA upstream 3406 44172556 ~ 44173125 (-) True G1177962
TU1343419 lncRNA upstream 36932 44206082 ~ 44206443 (-) True G1177987
TU1343420 lncRNA upstream 37309 44206459 ~ 44206676 (-) True G1177988
TU1343413 lncRNA upstream 41437 44210587 ~ 44210913 (-) True G1177981
TU1343426 lncRNA upstream 45224 44214374 ~ 44215085 (-) True G1177994
XR_005035560.1 mRNA downstream 3112 44116040 ~ 44118243 (-) False LOC110486490
XM_021558117.2 mRNA downstream 33703 44072439 ~ 44087652 (-) True tlcd4b
XM_021558118.2 mRNA downstream 34266 44072439 ~ 44087089 (-) False tlcd4b
XM_036941200.1 mRNA downstream 34755 44072439 ~ 44086600 (-) False tlcd4b
XM_021558111.2 mRNA downstream 53654 44053297 ~ 44067701 (-) True LOC110486482
XM_021556249.2 mRNA upstream 53383 44222533 ~ 44224572 (-) True LOC110485183
XM_036941205.1 mRNA upstream 126426 44295576 ~ 44311575 (-) True LOC110486496
XM_021558129.2 mRNA upstream 150851 44320001 ~ 44330723 (-) False LOC110486497
XM_021558127.2 mRNA upstream 152035 44321185 ~ 44330732 (-) False LOC110486497
XM_021558126.2 mRNA upstream 152035 44321185 ~ 44342927 (-) True LOC110486497
TU1343292 other downstream 92370 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 137788 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 147298 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 505347 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 706252 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 293804 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 314472 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 344286 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 483922 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 559426 44728576 ~ 44731351 (-) True G1178765

Expression Profile