RNA id: XM_021558129.2


Basic Information

Item Value
RNA id XM_021558129.2
length 3273
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC110486497
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44320001 ~ 44342927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGTGAGCTACCTGACCAaactctggggagagagagagagtgtgaaagaggTAGAGAAAGCCAGGAACAAAGGCAGAGAGTGTGAGAAACACAGACAAAAAGAGCTCTgtgtggaggaaaaaggggaagagaAAGGTACAGGTGGACTAGAGATTTGAGCTAGGCAGCTGTTGGGGGGAGGGACAGTGGGTGGACTCTGAGGAACAGGGGTGTGCTCAGAGCTGTTGCAGACAGGTTGGACAAGTTTCTTCCCACAATACCTGTCTCTCTCACGTTCTTAAACACACCAGTTGGCAGGAAAAGGAAGTGAAGCAAAAAAGGGCtgaagaaaaagagggagagtgtTCTGGTCCTTTATAAGTTGACAACCAGAAAGGAATTTAAAGATGCCTGAGGAGCAACCCTATTACGGAAAGAATGGTGAACCAAGAAAGTATGACCCCACCTTCAAAGGCCCCATCTATAACAGGGGCTGCACTGACATTGTATGCTGCATCCTCTTCATTATTTGCATACTGGGCTATGTTGCAGTGGGAATTCTGGcctggtcccagggaGACCCCAGGAAGGTGATCTATCCCACAGACAGCAGAGGACAGTTCTGTGGGCAGGCAGGCACACCTCTGGAGACGAAGCCCCTGCTGTTCTACTTCAACATCATGAAGTGTGCCAGTCCCATGGTGCTGCTGGAGTTTCAGTGCCCAACCACACAGATGTGTGTGGAGAAATGCCCTGATAAGTTCATGACGCTCCTGAAGGCCTACACCAATAAAGAGGACTTTAAGTATTATAAGAACTTCTGCAAGGAGGGTCTAGAGGGGCTGACTGTAACACAGATCCTGAGTTCTGGCCTGTGTCCTGCCATGCTGACTCCAAGTAAACCCTtcACCCGCAGGTGCTTCCCTGCCCTGGACcagaagaagggaggggagatCACAGTGGGAAATAACTCTAAGTTTGATGACGGGGAGGGGAACATTAGAGATGCCAAAGATCTGGTGGCGGGGGTCAAGAATGCCACAGTGGTCATTGAGGCTCGACAAGTGGCCATGAAGATCTTTGAGGATTACACCCAGTCCTGGTACTGGATCCTAATAGGGTTGGTGATTGCCATGCTCATCAGTCTCCTTTTCATCATCCTCCTGCGCTTCCTGGCCGGGATCATGGTGTGGGTCATGATCGTCATGGTGATTCTGGTCATTGGATACGGCATCTTCCACTGCTCCATGGAGTATGTTAGCCTGAAGTCAGAGGCAGGCTCTAATGTCACTCTAAAGGACCTGGGCTTCCAGACAGACTTCTCTGTGTACCTGCATATCAGACAGACCTGGCTGGCCTTCATTATTATTCTGGCCATTGTTGAggtcgtcatcattttgctgctCATCTTCCTCAGGAATAGAATCCTCATCGCTATCGCTCTCATCAAAGAAGCCAGCAGGGCCATTGGGTATGTGATGTCAGCCCTGTTTTACCCCTTGTTCACCTTTGCCCTGCTATCCATTGTCATCGCCTACTGGGCTGTCACCGCTGTGTTCCTGTCCACCTCCAATCAGCCCATCTATAAGGTGTTCAATGAGACGGCCTGTGATCACTCCAGGAAAATCTGCGAGCCAGCTAACTTCAGCACATCCAGTATGAAGGCGGAGTGCCCAGACTCCAAGTGTCTGTTTGCCTTCTACGGTGGAGAGACGGTCTACCACAAGTACCTGATCGGCCTGCAGTTCTACAACGTCTTCCTGTTCTTCTGGTGTGCCAACTTTGTGACAGCGCTGGGTCAGATGACCCTGGCTGGGGCCTTTGCCTCCTACTACTGGGCCTTCGTCAAGCCTGACGACATGCCTGCCTTCCCCATCTTCTCATCCCTTGGCAGATCACTcagGTATCACACAGGTTCCCTGGCGTTTggctctctcatcctctccatcatccAGATCATCAGGGTTCTGCTGGAGTACATCGACCACAAGCTCCAAGGAACCCAAAATAAGTGCACGAAGTTCCTTCTGTGCTGTCTCAAGTGCTGCTTCTGGTGCCTGGAGAAATTCATCAAGTTCATCAATAGAAATGCCTATATTATGGTGGCGATATATGGCAAGAACTTCTGCACGTCTGCCAAAGATGCCTTCTTCCTTCTCATGAGGAACATGATCAGGGTAGCCGTCCTGGACAAGGTGACAGACTTTCTGTTGTTCCTGGGCAAACTCCTCATCGTGGGGCTTGTGGGAATCTTTgcgttcttcttcttctctgggaGGGTGAAGGCCTTTGAGAACACAGCGCCCAACCTCCACTACTACTGGGTTCCCATCCTGACGGTGGTGGTTGGTTCCTACCTTATTGCCCACGGCTTCTTCAGCGTGTACGCCATGTGTGTGGACACACTCTTCCTCTGCTTCTTGGAGGACCTGGAGAGGAACGATGGCAGTGCGGAGAGACCCTACCTGATGTCTGACCGCCTCCTCAAAGTCCTGAATAAGAAGAACAAGCCTGAACCAGCAGAGTAGCGCTCTCTCATGTGGTGTGGAGGAGGGCAAAAGCTCTGGTGTGTAATTGTATATAGTGGAGTATGCCTTAAAGACCAGGTTGGCCTAGGACCTCATGCTGTCACTCATCCTGTACCAATCTGTTGCCAGAAGTCCAAACAATCGCTGCCGTCCTCTGTGGTCGAGTGAGGCGTATAAATCCTAAATGGAATTTTAATGCTGCATGCAGAGTGCTTACAAGGATgttattttttttcattgttaTTTGGTTTGGATGAAATCatagtttgtttattttttaagtaTATTTTCAAAAACCAGCAACCAAATGTGGTTCTTATTGAATATAGCTGTATGTTACTGTAATCAGACCAGCTGTAAGCCAGTATGTTATGAACATGCTTTGTTATGAATATTACTTGGAGTGTGTTATATGAAGGTGTGCACGGAACTGATCTATTTAGTGAagtattttatacatttgtatgTAACCTATGCAATTATTTTAATACATGCAGTACTTCAAGTTTAAAATGTATAACTACTTTTTAATTGTTGCAATATTTTCTCTGCTTTGTCCTTACCAAAGCCattaatacagtactgtagcccCTTTTTAACCCGCTGTTCAACATCAATGCTGCTCTCTGTTATAATTGCCAGGGAATGAGCAGTAAAGGTATTAAGATGGTGTGAAGCTGAAAGCAGGGAAAAATATGGGTCGTGTATGTGGATCTGTTTAAgtgcctgtggatttctgaaaatAAAAATAGTTTTGTACATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343475 lncRNA downstream 36288 44283510 ~ 44283713 (-) True G1178039
TU1343471 lncRNA downstream 41189 44278370 ~ 44278812 (-) True G1178035
TU1343466 lncRNA downstream 46728 44273061 ~ 44273273 (-) True G1178030
TU1343438 lncRNA downstream 47085 44233630 ~ 44272916 (-) True G1178006
TU1343437 lncRNA downstream 86970 44232781 ~ 44233031 (-) True G1178005
TU1343694 lncRNA upstream 12696 44343419 ~ 44343661 (-) True G1178224
TU1343699 lncRNA upstream 20574 44351297 ~ 44352694 (-) True G1178229
TU1343705 lncRNA upstream 40088 44370811 ~ 44371246 (-) True G1178235
TU1343717 lncRNA upstream 67613 44398336 ~ 44398695 (-) True G1178241
TU1343729 lncRNA upstream 89933 44420656 ~ 44420870 (-) True G1178253
XM_036941205.1 mRNA downstream 8426 44295576 ~ 44311575 (-) True LOC110486496
XM_021556249.2 mRNA downstream 95429 44222533 ~ 44224572 (-) True LOC110485183
XM_036941202.1 mRNA downstream 150851 44121355 ~ 44169150 (-) False LOC110486489
XM_036941203.1 mRNA downstream 150851 44121355 ~ 44169150 (-) True LOC110486489
XM_036941201.1 mRNA downstream 150853 44121355 ~ 44169148 (-) False LOC110486489
XM_021558132.2 mRNA upstream 29691 44360414 ~ 44370469 (-) True LOC110486499
XM_021558135.2 mRNA upstream 46718 44377441 ~ 44397386 (-) False LOC110486500
XM_021558133.2 mRNA upstream 46718 44377441 ~ 44397399 (-) False LOC110486500
XM_021558134.2 mRNA upstream 46718 44377441 ~ 44397427 (-) False LOC110486500
XM_036941207.1 mRNA upstream 48058 44378781 ~ 44397427 (-) False LOC110486500
TU1343292 other downstream 291016 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 336434 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 345944 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 703993 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 904898 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 132231 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 152899 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 182713 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 322349 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 397853 44728576 ~ 44731351 (-) True G1178765

Expression Profile