RNA id: XM_021558132.2


Basic Information

Item Value
RNA id XM_021558132.2
length 2817
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110486499
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44360414 ~ 44370469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATCCTCAGTCGCAATGCAGTCACTGTCAGTACATTGCATGGGATATGCATGGGATAAATCATGTGTGTAGcggatttttttttattcttcaagaTGTCAATTCAGATATTAATTTTCGCTTGTTCTAAGGAGTTTACGGTATTTCCAAAATACTGGCGCTTGTATTCCAGTACTTTCGACATATCCAATACTGAGCTCACTACCGGTCTCTTTTCGGCTTCGCTGTGATTAGCATGGCTGACACTGGTCTTGTAGAAACGCTTCTTCGGCGGGTGGAAAAGGTGGACGGTGGTCTCGACAGTCAGGATGTTGCGACCAGTCTCGGGGTGGACCACCAAGCTATCGTCGGTGCTGTGAAGAGCCTACTGGCACTTGGTGATGTGATCTCAGCTGAGCAGCGCTCCTCGAAGCACTGGGAGCTGACTGGGGAAGGCTGTGAGATAGCCGAACAGGGCAGCCATGAGGCCCGAGTTGTCAGCTCCATCCCAGAGGAAGGGATGCCTCAGAGCCAGCTCATGAAACTAGCCTTTGGGAAGGTGGGTTTCAGCAAGGCCATGTCCAACAAGTGGATCCGTCTGGACAAGGGCCACGAGGGCGGACCCAGGATCTTCAAGACTgtggaGCACTTAGAAGACTTGGTGAGGGACAAGTTGCTCCTGGTACAGAAAGGCCAGGCATCTCaactggaggagaaggagaagaatgaGCTGAAGAAACGCAAACTGCTCTCTGAAGTGACGGTCAAGTCCTATTGGATCACAAAGGGCAGCTGTTTCAGCACCACCATCACTAAGCAGGAGACAGAGCTCACCCCAGAGATGATCGCTAGTGGGAGCTGGAAGGAGAAGAAGTTCAAGCCTTATAACTTTGAGGCCTTGGGTGTGGCCCCAGACTGTGGCCACCTGCATCCGCTCATGAAGGTCCGCACGCAGTTCAGACAGATCTTCCTGGAGATGGGCTTCACTGAGATGCCCACCAACAACTTCATTGAGAGCTCCTTCTGGAACTTTGACTCCCTGTTTCAGCCCCAGCAGCACCCAGCCAGGGACCAACACGACACCTTCTTCCTGTCTGACCCAGCTCAGGCCCATGAGTTTCCCCAGGACTACctggagagagtgaggaaggTCCATTCAGAGGGAGGCTTTGGATCACAGGGgtaCAAGTATGACTGGAAGATTGAGGAGGCTCAGAAGAACATCCTCCGTACTCACACCACAGCAGTCAGCGCTCGCATGCTGTACAAACTCGCTCAGCAGGAAAAGTTCACCCCTGTCAAGTACTTCTCCATCGACAGAGTATTCCGTAATGAAACTCTGGATGCCACCCACTTGGCAGAGTTTCACCAGATTGAGGGAGTGGTGGCTGACTATGGCCTTACCCTGGGTGACCTCATGGGTATCCTTCATCAGTTTTTCAATAAACTAGGAATCACCAAATTACGCTTTAAACCGGCCTACAATCCATACACCGAGCCGAGCATGGAAGTGTTCAGCTATCATGAAGGACTGAAGAAGTGGGTGGAGGTGGGAAACTCTGGGATGTTCAGGCCAGAGATGCTGCTGCCTATGGGGCTCCCTGAGGGGGTGACGGTCATCGCCTGGGGGCTGTCTCTGGAGAGGCCCACCATGATCAAGTATGGCATCAACAACATTCGTGAGCTGGTGGGACACAAGGTCAACCTGCAGATGGTCTACGACAGCCCTGTGTGTCGACTGGACTCTTAGATTCTGTTCAGGCTTCCTCTTGGAGAGGCTCACATTACCATACACATCCCACCCAAGGCCTGTGTCATCAGGACCCCTTTTCCCACTAGCAACCATATGAACACTGAACAATCCCACAAACCCTTAATCTACCTTGGCCAGAGACAGATCTGTCTGtttgagagggagggaaagaggactTACTTTTCTTCTTATAGCTTGTCTGTGGTTCTAGCTGGATTATTGCCGTTGTTTAGCCACGCGATACACAGATTATACTTTAAACCTAATTTATGAAACAGTTATAACTCATCTTTGGTCCTAACCAGCAGCTATGCATGTGCTGAGGGGTAGGTAGTGCTATTACTCTGTTCTCTGCTGATGTGAGCACTACATCAGAGCATAAGGAACTTCACCAGTGAGTCTGTTTTTTAATTTAAACGTTAGGTAGCCGCTGTGCAGTTTTCTATGTAATGAAATGCTTGTACAGTAAAGATGCTAACTTGAAGCCCTTTAGCCTTCCATACAAAACCAACCAACTCTGTGCTGTGTCCACTCAGTTCATGAGACAAATTAGAAATGGTCAAATAAAGATGTTTGAAAGGAGCACGATTTACGTCGTCGGTTTAATGTAATCCCCATTGGTAATGCTGAGTTTTTGTTATTCTACTCTGGCTGTGCCAGGTCTGGTTTTAAACCGGTCAGAAGAACATTCTTGTTTTCCTCAATCTTGTGGCTGGTGCGTAACGTGGATTGGCGTGTTGAGTGATGTGTGCCAAGGTTTAACCCAGAGGATTTAGGAGTTATTTGTGTCATTCCAGTGAAGGTGGGATTACGAATCACCTTTATCGCCTCTAAGACTCATGTCATCGTACACAGGGTAGACTTTTAGCTCTGTGTGCTCACAGGAGATAATTGGGTTAACACATTAGAGCACTTTGGTTGTAAGTGTAACCTAAAATAACTTTAATATTGTACTAAATAAAGAGTCAAGTCTATTCCTGTTAGTTTGTTTTAGGCAACGGCACGTTGGATATGTTTTTTGCTGGTAGCCTAGTTCATCCCCAATCTCTGCAAGATTCTGAATAAATTTACTGTTGCAAAGAGA

Function

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343699 lncRNA downstream 7720 44351297 ~ 44352694 (-) True G1178229
TU1343694 lncRNA downstream 16753 44343419 ~ 44343661 (-) True G1178224
TU1343475 lncRNA downstream 76701 44283510 ~ 44283713 (-) True G1178039
TU1343471 lncRNA downstream 81602 44278370 ~ 44278812 (-) True G1178035
TU1343466 lncRNA downstream 87141 44273061 ~ 44273273 (-) True G1178030
TU1343705 lncRNA upstream 342 44370811 ~ 44371246 (-) True G1178235
TU1343717 lncRNA upstream 27867 44398336 ~ 44398695 (-) True G1178241
TU1343729 lncRNA upstream 50187 44420656 ~ 44420870 (-) True G1178253
TU1343731 lncRNA upstream 52912 44423381 ~ 44423949 (-) True G1178255
TU1343737 lncRNA upstream 62267 44432736 ~ 44433404 (-) True G1178261
XM_021558126.2 mRNA downstream 17487 44321185 ~ 44342927 (-) True LOC110486497
XM_021558127.2 mRNA downstream 29682 44321185 ~ 44330732 (-) False LOC110486497
XM_021558129.2 mRNA downstream 29691 44320001 ~ 44330723 (-) False LOC110486497
XM_036941205.1 mRNA downstream 48839 44295576 ~ 44311575 (-) True LOC110486496
XM_021556249.2 mRNA downstream 135842 44222533 ~ 44224572 (-) True LOC110485183
XM_021558135.2 mRNA upstream 6972 44377441 ~ 44397386 (-) False LOC110486500
XM_021558133.2 mRNA upstream 6972 44377441 ~ 44397399 (-) False LOC110486500
XM_021558134.2 mRNA upstream 6972 44377441 ~ 44397427 (-) False LOC110486500
XM_036941207.1 mRNA upstream 8312 44378781 ~ 44397427 (-) False LOC110486500
XM_036941208.1 mRNA upstream 8312 44378781 ~ 44397427 (-) True LOC110486500
TU1343292 other downstream 331429 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 376847 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 386357 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 744406 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 945311 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 92485 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 113153 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 142967 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 282603 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 358107 44728576 ~ 44731351 (-) True G1178765

Expression Profile