RNA id: XM_021558133.2


Basic Information

Item Value
RNA id XM_021558133.2
length 3284
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110486500
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44377441 ~ 44397427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGCTGTTCAGGTAGTCATTTCTGCTCCTCCGCGAAGAGAGTTGGAGCGAAGCGTTGCAGAGTTGCAGAACGAAGCAGCAGTGTTGGTGTTCTGTCTCAGGAAGGACCTGTTCTTGTATCACTGCCATATACACAGGATCGAAGACTCTAAAGCAACTATGCCTCCTCCCCTGCGCCACCGCTCCATGCGTATCTTCATGAACGACGACCGCCACGTGATGGCCAAGCACTCCGCTGTGTACCCCACACAGGAGGAGCTGGAGGGTGTGCAGAACATGGTGTCCCACACCGAGCGTGCCCTCAAGGCTGTCTCCGACTGGCTGGACGAGCAGGAGAAGGTGGTCAAGTCTGAGCCAGACGGAACCGAGTCCGATAAAGAAAGTGAGCCCAAGGTGTCGGAACAGGCCACACGGTCCCTGCGTGGGGTGATGAGGGTGGGCCTGGTGGCCAAGGGCTTACTGCTGAAGGGGGACCTAGACCTGGAGCTGGTGCTTTTGTGCAAGGACAAACCCACCATCACCCTGCTGAAGAATGTGGCAGACAACCTGGCTGTGCAACTCAAGACCATCACAGAGGACAAGTATGAGGTCACTCAGGTCATCCGTGAAGCCACCATCGTGATCAAGAGCACCAAGGAGCCTCCCCTGACCCTGACTATCAACATGACGTCCCCCCTGGTCCGCGAGGAGGTGGAGAAACAGGCTGCCGGAGAAACGCTATCAGTCAACGATCCCCCGGATGTTCTGGACAGGCAGAAATGCCTTACTGCCTTGGCGTCTCTTCGCCACGCCAAGTGGTTCCAGGCCAGGGCCAATGGGCTGAGGTCCTGCGTCATCGTCATTCGTATCCTGAGGGACTTGTGCTCCCGCGTCTCCACTTGGGCCCCACTGCATGGATGGCCAATAGAGCTGCTGTGTGAGAAGGCAATTGGCACAGGGAACCGGCCAATGGGGGCAGGAGAGGCTCTGCGAAGAGTTTTGGAGTGTCTGGCTTCTGGAATCCTCATGGCTGATGGTGCTGGAATCTGTGATCCATGTGAGAAGGATCTGACAGATGCTATTGGCCACCTGGACCTCCAGCAGAGGGAGGACCTCACACAGAGTGCCCAGCATGCCTTAAGGCTGTCTGCCTTCGGACAGCTTCACAAAGTGCTAGGGATGGACCCCCTTCCCTCCAAAATGCCCCGGAAACCCAGGAGCGAGACCCCAATTGACTATACAGTCCAAATCCCCCCCAGTACAACCTACGCCCCACCAATGAAGAGGCCCatcgaggaggaggaaggaggggaggacaaAAGTCCaaacaagaagaaaaagaagtTGCAAAAGAAATCCCCGGATGAGAAGTCGGAGCCTCCCCAGGCCATGAATGCTCTGATGAGGCTGAACCAGCTGAAGCCTGGCCTGCAGTATAAACTCCTCTCCCAAACTGGCCCGGTGCACGTACCAGTCTTCACCATGGCTGTTGAGGTGGACAGCAAGAGTTTTGAAGCCTCAGGCCCATCCAAACGCACTGCCAAGCTTCACGTTGCTGTCAAGGTCCTCCAGGACATGGGCCTCCCCACAGGTGTGGAGCTGAAGACTGCTGAGCCAGTGAAGACTGAGGTGGCAACGGCCATTGTGGAGGTGGTGAAACCCTGCATCACGCCCATCGCAATGGACACTGCAGCCACAGGGGCGGACAGCGTGGAGGCCACAGACGGTGCAGAGAGTGCTCGTCAACAGGGACCAATCCTGACCAAACATGGGAAGAACCCTGTGATGGAGCTGAACGAGAAGCGGCGCGGTCTCAAGTATGAGCTCATCTCAGAGACCGGAGGCAGCCACGACAAACGCTTCGTCATGGAGGTGGAGATAGACGAACAGAAGTTCCAAGGGACTGGCTCCAATAAGAAGGTGGCCAAGGCCtatgctgccttggcagccctGGACAAACTCTTCCCAGAGGGCTCTGTGACTGAGGCAGCCAAGAAGAAGAAACTCCCAATGCATGGGTTTGGCATGATGGGTGACCCGACTGGTGACCCGGCAGCCACTCCCAGGGGCAGGGGTAGAGGgcgtggcagggggaggggccgAGGGTTCAATAATGGTGGCAGCTATGGACAAGGTGGCTATGGAAGTTATGGATATGGGAACAATGGAAACTCTGGAGGCTATAATTATTACAATAGTGGAGCAAATGGTGGAGCTGCGACTGCTGGCACCGTTACTGAAGTCCCTGCGGCCAGCACTACAGGCGTGACAGCTACAGGAACCTACAGTTCATACTaccagaatgatggaggctactccAGCCCTTCTCCAGCCCCCAAAGCCCCTGTCAAAAAGGAGGCCAAGTCAACCTTCCCTGGACCACCAGGAGTTGGTGGAGGGGCCCAAGGGGCCTACCAGACCACCCCTGGCCAGAGTGCCTATAACCAGTATGGCCAGGGCTATGGGCAAGGCAATAAGACCTTCAATCAAAACCAGGCAGGAGCAGGAGTTTATCCTTACAGCACTGCCTACCCCAGCCAGGTGACGGGCAGCGCTGTTGCCAGCCAAGACTACAGTTACGACGGttatggaaatcagtcaaattaCAACGCACAGGCAGGAGCCAACCAGAGCTATGGTGCAAATCCAGCTCCATACCACAACCCAGTAGGATACGGCAGGGGAGACCCCACCATGAACTACCAGTACAGATAGACTGAATCCGTGATGGTGGCTATCCTGGTTTTTCCATGTCTGCGTGCATTTGGTTATTTTCTTTACTTTAAAGAAATAAACTGGACTTATTAGTTGGCAGCTCCCCACGGCTGAATCAAATAGTCTATTTCATCAGTTTGGTCAGTGTTCAAGCTTGTATTTTCTTTGTATGCACTCCACCAATTTCCCCtccccaccatcactaccactcaAAAAGAGGGAAtgacatcttttttttttaccaccagTTATGATTTTCTTTCTGTCCATACACAAGTTAACTATGTTGTTTTTGGCTGAGGATTTGTTTAAATGTTCATTTCACATTACAATGGGTCTGGAGAACTGCTTGTTTAAGTATTTGTTTGTAATTTTAGacatttatttttcaatgttTTACTTGATGTATTTCTGTAGTTTTAATTTTAACAAATAATTTTGGAAGTTactagaaatacattttaaatgtcaatCACATTTCTGGTCAAAGTAGATTTGGTGGTTGggattatttcattttttttctcagaACAGTGTATAAGAAAGTGGTGTTTGTATCAATAAAGGACTTATTTTGGAGCAAAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343705 lncRNA downstream 6195 44370811 ~ 44371246 (-) True G1178235
TU1343699 lncRNA downstream 24747 44351297 ~ 44352694 (-) True G1178229
TU1343694 lncRNA downstream 33780 44343419 ~ 44343661 (-) True G1178224
TU1343475 lncRNA downstream 93728 44283510 ~ 44283713 (-) True G1178039
TU1343471 lncRNA downstream 98629 44278370 ~ 44278812 (-) True G1178035
TU1343717 lncRNA upstream 937 44398336 ~ 44398695 (-) True G1178241
TU1343729 lncRNA upstream 23257 44420656 ~ 44420870 (-) True G1178253
TU1343731 lncRNA upstream 25982 44423381 ~ 44423949 (-) True G1178255
TU1343737 lncRNA upstream 35337 44432736 ~ 44433404 (-) True G1178261
TU1343760 lncRNA upstream 70571 44467970 ~ 44469333 (-) False LOC110485184
XM_021558132.2 mRNA downstream 6972 44360414 ~ 44370469 (-) True LOC110486499
XM_021558126.2 mRNA downstream 34514 44321185 ~ 44342927 (-) True LOC110486497
XM_021558127.2 mRNA downstream 46709 44321185 ~ 44330732 (-) False LOC110486497
XM_021558129.2 mRNA downstream 46718 44320001 ~ 44330723 (-) False LOC110486497
XM_036941205.1 mRNA downstream 65866 44295576 ~ 44311575 (-) True LOC110486496
XM_036941209.1 mRNA upstream 1678 44399077 ~ 44409676 (-) False LOC110486501
XM_021558137.2 mRNA upstream 1679 44399078 ~ 44409673 (-) False LOC110486501
XM_021558138.2 mRNA upstream 1679 44399078 ~ 44413719 (-) True LOC110486501
XM_036941210.1 mRNA upstream 69869 44467268 ~ 44488114 (-) False LOC110485184
XM_036941211.1 mRNA upstream 69869 44467268 ~ 44488114 (-) False LOC110485184
TU1343292 other downstream 348456 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 393874 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 403384 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 761433 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 962338 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 65555 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 86223 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 116037 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 255673 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 331177 44728576 ~ 44731351 (-) True G1178765

Expression Profile