RNA id: XM_036941223.1


Basic Information

Item Value
RNA id XM_036941223.1
length 1707
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110486503
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44488948 ~ 44498025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTGTTTACGGAAGTCGGAGGCgactacctgtgctaattagctatctgcgTCTCCCAACATGTGTGGGAACAaggacgccacaaacgtgttgtaaCTGGAAAATACTGCCGGCTGCAACTGTTAAAACAGGatacaGTAGGCGATGCAATGCGTAATACATGTCAGGAGCACAGGGCGTCGAAGACTCAATGATTTCTCCAATGGAACCGCACTGGAAATGGTGTCTGACCCTTCTTGTGGTCTTGGTCAGTGCTCACACTGATACCAAAGTCACATCCTCCCAGCATATGGATGACTTCATCAGAGTGTTGGAGCAGGTAGAATACAGAAACCCTGGACTGCAGCCTGTAAATGTGTTGAGAGGCCTGCGCAGGGCAGCTGGTCTCAGAGATGAGTTCATGCAGCACTTCTTGGGCACTATCAGGGAGGACAGCACCTCAGAGGCACCAGTTATGGACTCCAATCTCTCAGATTTCATTGGCAGAGCTGTGCACCATCaggtgacagagagaggtagagaggaaggggttgtccTTACTGCTGATGGCACCACGGTTGCTATGAGCCCAGTCCTTCTGGGTATTGAAGCTGGGCTAGTGTCTAAGACGAGGTGTCAAGTCCGTGGCCTGTACCCCCTCACTCTGGCTAGGAACTTGGGTCTGTCCTTCCAGCGCTTCCatagctctctcctctcccatcgccTGGGCCCTGATGGCTGCTGGGATGACGTGACCTCACCTCAGGTCTTCACCCTCTCCGACAAGCCCTCCCTCGCCACCGATGCCCTGGTTAACGGCGGTATGGATGGTGTGATTCTAGGGATGGAGGTCTCAGCTCAGTCCCAGCGTCCTCTCAAGCTGAGCAGCCTACTGAGGACGTACTACTGTCATCATCTTGAGGTGGAAGGACTGGACACTGCTCCTCGTCTGATCAGCCGCCTACGCAGGGAGAACTTCAGAGAACTGGCCAGGCCCCCCCTCCTGCAGAGGCAGGTGGTGAGATCCCTGGTCCTACAGAGGAGACTGATCGACCACTCTACGATGTTGTCACAGGAAAAGGAAGAGCTGACAGCGGTGGTGAGGGAAGGAATAAAGGAGTTTGTCCACAAATACATGGACTGTCCAGCTATTATCCCACGGTGTCAGTGGGGGGCTGCACCATATCGGGGCACTCCCACCCCCCTGTCACTCCCCCTCTCGTTCATGTACATCCACCACACATACCAGCCTGGCCAGCCTTGTCTCACCTTTCAGCAGTGTTCTGCAGACATGAGGTCCATGCAACGCTTTCACCAGGATGACCGGGGCTGGGACGATATTGGATACAGCTTTGTGGCAGGCTCTGACGGGTACCTCTATGAAGGGCGTGGGTGGCACTGGCAAGGGGCCCACACTAAGGGCTATAACTCCAAGGGCTACGGGGTGTCATTCATCGGTGACTACACCTCCAGATTACCATCACAACAGACCATGGAACTGGTGAGAGATCGTCTGGCATCCTGTGCTGTGGGAGGCGGGCGACTGGTCGGCAACTTCACCCTGTATGGCCACAGACAGCTGGTTAAGACTTCCTGTCCTGGAGACGCCTTATACTCAGAGATCACAGGCTGGGAGCACTTTGGGGAGGTTCAAAACTGAAGATATGGTGAAAAGTGGAGTGATTAATCTTGACCAGTATCACATAATAAATATTTAATATCTAAAA

Function

GO:

id name namespace
GO:0009253 peptidoglycan catabolic process biological_process
GO:0042742 defense response to bacterium biological_process
GO:0008745 N-acetylmuramoyl-L-alanine amidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343760 lncRNA downstream 19615 44467970 ~ 44469333 (-) False LOC110485184
TU1343737 lncRNA downstream 55544 44432736 ~ 44433404 (-) True G1178261
TU1343731 lncRNA downstream 64999 44423381 ~ 44423949 (-) True G1178255
TU1343729 lncRNA downstream 68078 44420656 ~ 44420870 (-) True G1178253
TU1343717 lncRNA downstream 90253 44398336 ~ 44398695 (-) True G1178241
TU1344264 lncRNA upstream 96524 44594549 ~ 44594970 (-) True G1178730
TU1344260 lncRNA upstream 101868 44599893 ~ 44601037 (-) True G1178726
TU1344285 lncRNA upstream 135521 44633546 ~ 44633765 (-) True G1178751
TU1344288 lncRNA upstream 140796 44638821 ~ 44639155 (-) True G1178754
TU1344300 lncRNA upstream 157739 44655764 ~ 44656113 (-) False G1178764
XM_036941210.1 mRNA downstream 834 44467268 ~ 44488114 (-) False LOC110485184
XM_036941211.1 mRNA downstream 834 44467268 ~ 44488114 (-) False LOC110485184
XM_021558138.2 mRNA downstream 75229 44399078 ~ 44413719 (-) True LOC110486501
XM_036941209.1 mRNA downstream 79272 44399077 ~ 44409676 (-) False LOC110486501
XM_021556251.2 mRNA upstream 127224 44625249 ~ 44627425 (-) True LOC110485185
XM_036942625.1 mRNA upstream 144403 44642428 ~ 44643973 (-) True LOC118938554
XM_036939756.1 mRNA upstream 146626 44644651 ~ 44649032 (-) True LOC118938082
XM_036941228.1 mRNA upstream 167738 44665763 ~ 44672951 (-) False si:ch211-106h11.3
XM_021558161.2 mRNA upstream 179854 44677879 ~ 44681904 (-) True LOC110486512
TU1343757 other downstream 25722 44462954 ~ 44463226 (-) True G1178281
TU1343292 other downstream 459963 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 505381 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 514891 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 872940 43601363 ~ 43616008 (-) False G1177552
TU1343763 other upstream 15411 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 155047 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 230551 44728576 ~ 44731351 (-) True G1178765
TU1344529 other upstream 471185 44969210 ~ 44981200 (-) True G1178958
TU1344579 other upstream 528490 45026515 ~ 45028613 (-) True G1178982

Expression Profile