RNA id: XM_021558149.2



Basic Information


Item Value
RNA id XM_021558149.2
length 4501
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110486506
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44554447 ~ 44601022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACGAGCATCAGACCGTTTTTAAACTGTTGATTGACGACCAGGCACGCACAAAAGAGCTCTCAGCAAGGGAGGAGTGGCGTAGGATAGCATTAATTTTTCTCACAGTAACAAAATGTCAGGTATTTTTTTGTGGTTTATAGATATTTCGCCTGGATTTAAACTGGAAAGGATAAGGTGAGCGGTAGGCTACGTAAGCGGGAGGCTATGTTATGTAGACATAACGGTTCTTGTTCATAAACCGATTATAGGCTTGACGATGCAATGCATGGAAATAATAGCCTAATAATAATGTAGATTTTCGAGAGTGAGTGAACAATTGAATTATGTCAATTTAGTATTATTTCTGTAGCTGTCATGTTCTCCAATTACATGGGGTAGAATGTCAGATGAACCAGTCAACGTCAGCCTTCAAACTACACAACATAGTTGAAAGGTGGACACGGTGATACGTAACTTCTTGCTCTTTTGGAACATGGACTAAAGAAGAGAATGAGAGGCCTACAATGTTTATTTTGTCGATGCTCTCGCTCACCTGGGCAGAGAGGCGCCCGTTAACTCTCCGTACAGTTCACTGTCGTTTTAAAGTGCTGAGGGTATTCGCCAATGTTGGCCTGCTCTTTGACTGCAAATAACTCCAAACGGACAGGAACTGATTTGATGGTGTCGTAGATCACTAAAATGATTTGATAATCAAGAATTCATCAGCTACATTGAAGAAGAATTTGTCATCCCACCGCTGTGGTAGCCTGTGTGATACACAAGACACCAGATGGCTAACAACGACTCGATGCAAAGTGACCCAGGTGGGCTGTCACTGCTGGAGCAGCTGGGTCTGGACCAGAGCTCAGACTTCTCTGACTCCAGCATTCAGCAGCAGCTGGACGGAGCGAGGGACCACATCCGCCGGGAGATCAGGAAGGAGCTGAAGATCAAGGAAGGAGCAGATAACCTGAGGAGAGCCACCACAGACAAGAAGAATGCCCAGCAGGTGGACAGCCAGCTTCGCAGCTCCAACCGCAGACTGGACAGCCTGCACTCTAAGTTACAGGAGCTGGACGCTTACATTGTGGTCAAAGGAGGGGACGACAACAACACAGATGCCCCCAAGTCTCCCGGGGCGCGCAGCCGCTCGGCCAATCAGGACCGGATCACGGCTCTGGAGCGCCAGCTCAACATCGAGCTCAAGTGCAAACAGGGAGCCGAAAACATGATCCCCATTTATGCCAATGGAGTCACCAAGGACAAGAAGATGCATCAGACGGCCCAGCAGATGCTGCAGGACAGCAAGACCAAGATCGACATCATCCGCATGCAGATCCGCAAGGCCATGCAGGCCACTGAGCAGACTGAAGATATCCAGGGTAAGCCAGACACGTGTGGGGTGGAGCTGCGTGTGGAGGAGCTGTGGCATCATTACCGTGTGGAGCACGCCATGGCTGAGGGAGCCAAGAACATGCTGAGGCTGCTGGGAGTAGGGAAGGTCCAGGACAAGAAGGCCATGTCAGAGgcCCAGTGTGGTCTGAGTGAGTCTTCACAGCGCTGTGACCTGCTGAGAGGCTCTCTGGAGCAGCGTTTGCTGGAGCTGACAGATGACCACCCCAAGGCCTGCCTCATCAAGGAAGAGCTGGTGCTGGCATCCTCCTCAGCCTTCAGCTCCAGACACGGAACCCCCTATGTACACAACCAGTACAGCACCCTCTGCAAGCCCTCCCCACTCACTGgtaCCCTGCAGGTGCGTTTGCTGGGCTGTGTAGGGGTGTTGGAGGTGGTCCCGGGGCGCAGTAGAGGAACCCCGGTGGTCTTGCCTTGCTACATCCCAGGGGACGGACgctccttcaaactcagtggtcTCTACAGCCGCAGCACCAGCAGCATGAGCCTCAGGATCCCCGGCAAGACCGACGAACTctcctCGGAGGTGAGTGCGGTGTTGAAGCTGGAGAACACAGTGGTGGGACAGACGTGCTGGAAGACAGTGGGAGAGCAGGCCTGGGACCAGACCTTCACTGTAGAACTGGAAAGATCCAGGGAGATGGAGATAGCAGTGTACTGGAGGGACTACCGCTCCCTGTGTGCTCTCAAGTACCTGAAGCTGGAGGACTTCCTGGACAACCAGAGACACAAAGTTCAGCTGGAGCTAGAACCTCAGGGCCTGCTGCTGGCAGAGGTAATGTTCTTCAACCCAGTCATAGAGAGAGGCCCAAGACTGCAGAGACAAAAGAAGGTTTTCTCCAAACAGCATGGTAAAGCGTTCCTGCGTGCTCGCCAGATGAATGTTGACATCGCCACCTGGGTCCGCCTACTGAGGAACGCCATCCCTACTGGAAACAACGTTCCCAgctacaccccacacacacactcacgctcaCATTCtggGGAGATCTCAGTGGAGAAGCTGACTCTGGAGAGCGACTCTCCTCCGAGACCTGAGATCAGGAGAGACGTTGTTGACACACCCCACCTGGAACAGCCTGTGATCGAGCCCTTGTCCCCTCCAGACCTCGCCCAAGGCCGGCCAACCAGAACCCTATCCACGAGTTCCTTGCGCAGACAGAGCAAAGGCCCTCTGTGTCTGCAGGACTTCAAGCTGATCGCTGTGCTGGGCAGGGGACACTTTGGCAAAGTGTTGTTGTCGGAGTACAAGAGGACAGGCAGTGTGTACGCTATCAAAGCCCTGAAGAAGGGAGACATTGTGGCGCGGGACGAAGTGGACAGtctGATGTGTGAGAAGCGTATTTTTGAGACGGTGAACAGCTCCCACCATCCCTTCCTGGTCAACCTGTTTGCATGtttccagaccccagaacacgtGTGCTTCGTCATGGAGTACACGGCTGGGGGTGACCTCATGATGCACATCCACGCAGACGTCTTTACAGAGCCCCGAGCCGTGTTCTACGCAGCCTGTGTGGTTTTGGGCCTGCAGTTTCTTCATGACCATAAGATTGTGTACCGGGACCTTAAACTCGATAACTTGTTGCTGGATACACAGGGCTATGTGAAGATCGCAGACTTCGGGCTCTGCAAAGAGGGTATGGGCTATGGGGACAGGACCAGTACGTTCTGTGGTACTCCTGAGTTCCTGGCTCCAGAGGTTCTGACAGACACCTCCTACACCAGGGCAGTGGACTGGTGGGGCCTGGGAGTACTGGTGTATGAGATGCTGGTGGGAGAGtctccATTCCCAggtgatgatgaagaggaggtgTTTGACAGCATAGTGAATGATGAGGTGCGCTACCCTCGCTTCCTCTCCACAGAGGCCATCGGCATCATGAGACGGTTGTTGAGGAGGAACCCGGATCGGCGCCTAGGCTCTGGTGAGAAAGATGCTGATGATGTCAAGAAACAGCCTTTCTTTAGGGGTGTGGACTGGGAAGCGCTGCTGCAGAGGCGGCTCCCGCCCCCGTTCGTCCCCAACATCAGGGGGAGGGAGGACGTCAGCAACTTTGACGAGGAGTTCACCGCCGAGACCCCCGCCCTCACGCCGCCCCGCGAACGCCGCACCCTCTCCCGCAAGGACCAGGACTGCTTCAAAGACTTTGACTACGTCTCTGACCTCTGCTAAGGGTCAAGGTCAGACTCTCCCTTTAGACTGTAAGAGGAGCTGACGAGGGACTCTGCACTGCGAGAGGGATGTTACCAGGAGAGGCTtactgctgttctgtcctgtctgaACTGTGAAGAGGCAGAAGAAAGTTACGGGAGGATGTGAATGCTGCAGCGGAGATACATTGTCAGGGATCTACTGACCTCTAATGGATTTCTGGAGGGCCTTTTATAGGATGATACATGAAGATAATCCGGATGATGTAACGCTCAGTGGATGAGTGCTGGGGCACAGTGTCTGTGCAGCATAGCAACATTGGAACTGACTGAAGTTTATTTCCCTATAGAAAGTAATGGAGCCCACTTAAAAGATGAAAAGTATCTTCTCTGTAGAAGACAATACAGTTGGTGCAGGGATCATCAGATATGATTACTCTCAAATGGACCTCTCTCTATTGCCTCTCTGCCTGCTATCTTTCCTCTCCCTTTATCGTTTGAGGCTGCTTACTGTTTCTGTGTTTAAATTCTGATCCTGCCTCAGTCTGTTCCCATTGCTGTCATCTGGAGTCCTGCACCTCTCATAAATCACCACATGGGGGAGCCATAGAAAAGGTAAAGTGTTCAAGAGGAAATTGAGGAGATGACCAAGTGGGGTGCAGATTCAGTGTGTGACGAATGCCAAGGGATGCTAGTGAGGATGATGAGGGTGGAAGGATGAGCGTTGAGGTGTTTTTCTGTGTTTGGGCTGGGTCCTCACCATGTCATGTTACCCCTCGTCTTCAAATGGGatactcctctactctccccgCTCTGTACGAGTTTTATCCTCAAATCATTTAGAATTATGTTTCAAATAGTTTTCTGTGATTTTAGTTTCTTTTTGGTGTTTTGATTTGTCAATCATGCCGATGTTATGTTTGGAATTGTGACTTAGTAAAAATGTGAACCCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1343807 lncRNA upstream 1045 44553160 ~ 44553402 (+) True G1178316
TU1343626 lncRNA upstream 73746 44480297 ~ 44480701 (+) True G1178172
TU1343584 lncRNA upstream 74347 44479727 ~ 44480100 (+) True G1178139
TU1343622 lncRNA upstream 74867 44479378 ~ 44479580 (+) True G1178170
TU1343621 lncRNA upstream 77661 44476112 ~ 44476786 (+) True G1178169
TU1343838 lncRNA downstream 11144 44612166 ~ 44612256 (+) True G1178343
TU1343841 lncRNA downstream 22422 44623444 ~ 44624369 (+) False engl
TU1343842 lncRNA downstream 22901 44623923 ~ 44624369 (+) True engl
TU1343846 lncRNA downstream 24559 44625581 ~ 44625849 (+) True G1178349
TU1343855 lncRNA downstream 53385 44654407 ~ 44656561 (+) False G1178358
XM_021558144.2 mRNA upstream 8963 44513282 ~ 44545484 (+) False LOC110486504
XM_021558145.2 mRNA upstream 8963 44513282 ~ 44545484 (+) False LOC110486504
XM_021558146.2 mRNA upstream 8963 44513282 ~ 44545484 (+) False LOC110486504
XM_036941212.1 mRNA upstream 8963 44513282 ~ 44545484 (+) False LOC110486504
XM_036941213.1 mRNA upstream 8963 44513282 ~ 44545484 (+) False LOC110486504
XM_021558151.2 mRNA downstream 11884 44612906 ~ 44623545 (+) False engl
XM_021558152.2 mRNA downstream 11884 44612906 ~ 44623545 (+) False engl
XM_021558150.2 mRNA downstream 11884 44612906 ~ 44623745 (+) False engl
XM_021558153.2 mRNA downstream 11884 44612906 ~ 44623745 (+) False engl
XM_036941226.1 mRNA downstream 13534 44614556 ~ 44623745 (+) False engl
TU1343210 other upstream 348877 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 432525 44118878 ~ 44121922 (+) True G1177750
TU1341841 other upstream 1146505 43406168 ~ 43407942 (+) True LOC110486465
TU1341800 other upstream 1152167 43397749 ~ 43402280 (+) False LOC110486464
TU1343861 other downstream 67046 44668068 ~ 44668459 (+) True G1178363
TU1343925 other downstream 258847 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 319341 44920363 ~ 44926317 (+) True LOC110485188
TU1343973 other downstream 366346 44967368 ~ 44969719 (+) True LOC110486526
TU1344763 other downstream 711308 45312330 ~ 45313033 (+) True G1179156

Expression Profile