RNA id: XM_021558154.2


Basic Information

Item Value
RNA id XM_021558154.2
length 2319
RNA type mRNA
GC content 0.57
exon number 5
gene id LOC110486509
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44649848 ~ 44653738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAACATGTGCCAGCCAGGGTGAAATAAATAAGCACAAAAGACActgtatagttttttgttgtaaattattattttatattttgtttgtttgtaataATACTTTTTGGAGGGGAGTAGGACTAGGCTACAGACAGAGCCTTCTATTGCAATAAAAGGCTTTGGCTATGGACTGGGCTGAAATTAATTAGATTTCTTCTCAACATCGCACTTCGTCATGACAACCGTTAAAGAGCCAAAACCCCGTGTTTGTCACCACTGCCGCGGCGCTCCACTCTCAGCACCAGTCACCGCCCGCAACAGAAAAAGTTTTTTATGTTTAATTCTTGAGAGAACCGGACCGCACCGGACTAGTCACCCCAGAGCGATGCACCGCGCAATTCACTGTTGTTTTTCTAGACACCGTTTGAGCAGCATACAGACAAGAAAACGTTTTTGTGAAAGAAAAAGCTGTCTGACAAACGTGCTGTGGTTGCAGTCAAATCTCCTACACCAGTGTTTTTTAAATGTCGGGTCTGGTCCCACTGGAGGGCTGCAACTGATTTCTTTCAGGTCTGGATCCTGGCACAATAAGCATTGGAGTTTTTTGGTGACAGCAGAATCACTATTCCACCATTTTGTTAGTCAGTTCTTTACCCAGCATAAGCCATGTTCAGCCTGTCAGAGCTGGCCTCTCTGAGTGAGCGTCAGGGCACCTCCAAGCTGCTGAAGCCCTGGTGGGAGGTCTTCATGGATTACCTGGTGGTGCTGATGCTCATGGTATCTGTGTTGTCAGGCACCCTGTTGCTATCTCGAGACAGGGTGGTGTGTCTCCCCCTGGACCTCACTACCACCCCCACTAACCAGAACACCTCATCCAGCAGTGGTATCGTACCTCAACCCCACCCCCCTAACAGGCCCCCCACCAAACCATCCCCCCTACCAGCCAGCCCTTGGACCCCTGCTAGGGGCAGACGCACCCACCTGGACTACCAGCGGTATGTCTACATTAGCCAGGTGTGCTACCACGAGGCCCTGCCCTGGTACTCCCGCTTCTTCCCCTATGTGGCTCTACTCCAGTCCCTGGTGCTATTGGCCAGTGGTTGCTTCTGGTTCCACTTCCCCCTCACCTCCGCCCGCATAGAGCACTTCCTGACCATCCTGGCCAAGTGCTGTGAGTCTCCCTGGACCTCCCGCGCCCTGTCCCATGCCGCCCgccaggaggagggaggggaggagacaggcccCCAGGATCTCCAAACGCCTCCTCCTACTCTCCTGTCTTCACCCCCTGTACCCCGCAACCGCCAGTCCAGCCTGGACTCGGGCACAGACAGCCCCCTGCTGGTGAGATCGGATAGCGCGTCCACTGCCGCCCCTCCCTCGCCctgcccctccactctctcccggACCTCCTCCCTGTCCACCATGTCTCTGTCCCGGGCCCATGTCCCGGCTTCTAAATCCCCTGTGGTGCTGGATGGTTCACGGCAGGTTGCCAGTTTGGACCGGAGTGACGGGGAGCAGGCCAGGGCACTGTTCGAGAGGGTGCGTCGCTTCCGCTCCCACTGTGAGAACTCTGAAGTCATCTACAAGgTGTACTTGGCCCAGACGGTGTTCAAGCTGCTGCTGGTGGAGCTGATAGTGGGCTACACCACCCCTCTGATGAGCTCCATCTCATTCACCCACACCTGCCTACCCCAGGCCCACGCCCTGACTGGCTACAGTGCCTTTGAGTGTACCCATGCCCTGGCCTCGGTCCTCCACAAGTTGCTGCTGGCCTACATCAGCCTGGTGGGGCTCTTTGGCCTGCTGAGCATCTACACCCTCAGCTGGATCCTCCACAGCTCCCTGTGTCAATACTTCTTTAACAAACTGAGGGAGCTGGGCTCCATGAGGGATGTCCCTGACTTATGTAATGACCTGGCCTTCCTGTTACACATGGCTGACCAGTACGACCCCCTACTGGCCCAGCGCCTTTCCGTCTTCCTGTCACCTGTCAGCGAGACACGCCTGCTGGAGGAGAGCCTAGAGAGGCGCTGGGGTTCCGAGCTGCAGCTGCAGCTGCCCCTGCTGCAGCTGGTGGCCCTGCCGCGCCTGCCCCCCGCCCTCTTCACCCTCAGCCAGCTGGTGGTGCTCAAGCTGGAGCTCATCTCAGACGCCAAGCTCCCCGCACAGGTGGCCAACATGACCTCACTCAGGGAGCTTCATTTGTAACACTGTACTGCAGCCATGCAGCCTGGTGCCCTGGTGGTTCTGCAGGAGCGTCTGGAGGCCCTGCACCTCACCTCCACCCAGGCTGCAGAGATCCCTGGCTGGGTCTACTCTCTCTGCGGCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343846 lncRNA upstream 23999 44625581 ~ 44625849 (+) True G1178349
TU1343841 lncRNA upstream 25479 44623444 ~ 44624369 (+) False engl
TU1343842 lncRNA upstream 25479 44623923 ~ 44624369 (+) True engl
TU1343838 lncRNA upstream 37592 44612166 ~ 44612256 (+) True G1178343
TU1343807 lncRNA upstream 96446 44553160 ~ 44553402 (+) True G1178316
TU1343855 lncRNA downstream 669 44654407 ~ 44656561 (+) False G1178358
TU1343856 lncRNA downstream 1607 44655345 ~ 44656605 (+) True G1178358
TU1343858 lncRNA downstream 11214 44664952 ~ 44665451 (+) True G1178360
TU1343860 lncRNA downstream 13875 44667613 ~ 44667922 (+) True G1178362
TU1343862 lncRNA downstream 15500 44669238 ~ 44685080 (+) True G1178364
XM_021558150.2 mRNA upstream 26103 44612906 ~ 44623745 (+) False engl
XM_021558153.2 mRNA upstream 26103 44612906 ~ 44623745 (+) False engl
XM_036941226.1 mRNA upstream 26103 44614556 ~ 44623745 (+) False engl
XM_021558151.2 mRNA upstream 26303 44612906 ~ 44623545 (+) False engl
XM_021558157.2 mRNA downstream 3252 44656990 ~ 44663565 (+) True LOC110486510
XM_021558163.2 mRNA downstream 28318 44682056 ~ 44690065 (+) False LOC110486513
XM_021558162.2 mRNA downstream 28491 44682229 ~ 44690065 (+) True LOC110486513
XM_021558159.2 mRNA downstream 45797 44699535 ~ 44731365 (+) False LOC110486511
XM_036941229.1 mRNA downstream 45797 44699535 ~ 44731365 (+) True LOC110486511
TU1343210 other upstream 444278 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 527926 44118878 ~ 44121922 (+) True G1177750
TU1341841 other upstream 1241906 43406168 ~ 43407942 (+) True LOC110486465
TU1341800 other upstream 1247568 43397749 ~ 43402280 (+) False LOC110486464
TU1343861 other downstream 14330 44668068 ~ 44668459 (+) True G1178363
TU1343925 other downstream 206131 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 266625 44920363 ~ 44926317 (+) True LOC110485188
TU1343973 other downstream 313630 44967368 ~ 44969719 (+) True LOC110486526
TU1344763 other downstream 658592 45312330 ~ 45313033 (+) True G1179156

Expression Profile