RNA id: XM_021558157.2


Basic Information

Item Value
RNA id XM_021558157.2
length 1822
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110486510
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44656990 ~ 44663565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAAGGATCTCGTGCTTGAGGCTCTGAGCTGTCCGATCAGGTCCATTGTCTACTGAGCGGCTTGGCTCTTGCCCACTatttcccattggaaacgactaTCTTGGTTAGTTATAAAACATCTATCGTCAGTGATGATTGACAGCTTGACTTGGCCAATCGTGATACGATTAGGAGTAGTTTCGTCAAACTGACACGTCAAACAAACCAATGATATTGCTGTATTTAGTGGAGGCGGAAGTTGTGGCCTGTGGTATAAACTGAGGCCTCCTCTCCATGTGGTTTTGAGGAGCATTTTTCGGAGGTTGAATTGTAACATCGTTGTAAGTCAGAATGGCTGAGAATGACGCTGAGAATGAGCTGCTGGACTATGAAGAGGACGAGGAGCCCCAGGGAGCCCCAGAGACCTCTGCCCCAGCAGGCAAGAAGGAGGTGAAGGGCTCCTATGTCTCCATCCACAGCTCTGGCTTCAGAGACTTCCTGCTCAAACCAGAGCTGCTCCGTGCGATTGTCGACTGTGGCTTTGAGCATCCGTCTGAAGTTCAACATGAGTGCATCCCTCAGGCCATCCTGGGCATGGACATCCTGTGCCAGGCTAAGTCTGGTATGGGCAAGACTGCAGTGTTTGTTCTTGCCACACTACAGCAGATCGAGCCTGTGGATGGACAGGTGTCAGTTCTTGTAATGTGCCACACACGAGAGCTGGCCTTCCAGATCAGCAAAGAGTACGAACGCTTCTCCAAGTACATGCCCACAGTCAAGGCAGCCGTGTTCTTTGGGGGCCTGTCTATCAAGAAGGATGAGGATGTGCTGAAGAAGAACTGCCCTCACATTGTGGTGGGAACCCCTGGCCGAATCCTGGCCCTCATCCGCAACAAGACCCTCAACCTAAAGAACGTCAAGCACTTTGTCCTGGATGAGTGTGACAAGATGCTGGAGCAGTTGGACATGAGGCGTGACGTACAGGACATCTTCAGGCTAACGCCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTCAGCAAGGAGATTCGACCGGTCTGCCGCAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGATGATGAAACCAAGCTGACGCTGCACGGTCTGCAGCAGTACTACTGCAAGCTGAAGGACAGCGAGAAGAACCGCAAGCTCTTTGACCTGCTTGATGTGCTAGAGTTCAACCAGGTGGTGATCTTTGTCAAGTCAGTGCAGCGCTGTGTGGCACTTTCTCAGCTACTGGTGGAACAGAACTTCCCTGCCATTGCCATCCACAGAGGCATGGCTCAGGAGGAGAGGCTGTCCCGGTACCAGCAGTTCAAGGACTTCCAAAGGCGGATCTTGGTGGCCACCAACCTGTTTGGCCGAGGGATGGATATTGAGCGGGTCAATATTGTCTTCAATTACGACATGCCTGAGGACTCAGACACATACTTACACAGGGTGGCCCGTGCTGGGCGGTTTGGAACCAAGGGTCTGGCTGTGACCTTTGTGTCAGACGAGACCGATGCCAAGACTTTGAATGACGTGCAGGACCGTTTTGAGGTCAATGTGGCTGAGCTGCCAGAAGAGATCGACATTTCCACTTACATTGAGCAGTCCAGATGAGTCCTCCATCCCTGAAGAAATGTCCGCTAACCCTGAATCTGTCCTTGTTTGGATGAAAAACCCTCCTCGCTGTTTTATTTTAAAGCTCTGTTCCTTGACTGTTCACCatacgtttttattttatttgaatgtatCATTGGGGGTTGTCTGGTTTTAAACTTGTGTTGTGGTTTGGTCAATGAAATTAAAACTTTTTATAAAATTCCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13182 DDX39; ATP-dependent RNA helicase DDX39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343856 lncRNA upstream 385 44655345 ~ 44656605 (+) True G1178358
TU1343855 lncRNA upstream 429 44654407 ~ 44656561 (+) False G1178358
TU1343846 lncRNA upstream 31141 44625581 ~ 44625849 (+) True G1178349
TU1343841 lncRNA upstream 32621 44623444 ~ 44624369 (+) False engl
TU1343842 lncRNA upstream 32621 44623923 ~ 44624369 (+) True engl
TU1343858 lncRNA downstream 1387 44664952 ~ 44665451 (+) True G1178360
TU1343860 lncRNA downstream 4048 44667613 ~ 44667922 (+) True G1178362
TU1343862 lncRNA downstream 5673 44669238 ~ 44685080 (+) True G1178364
TU1343908 lncRNA downstream 118835 44782400 ~ 44782626 (+) True G1178409
TU1343909 lncRNA downstream 119613 44783178 ~ 44784430 (+) True G1178410
XM_021558154.2 mRNA upstream 3252 44649848 ~ 44653738 (+) False LOC110486509
XM_021558155.2 mRNA upstream 3252 44649848 ~ 44653738 (+) True LOC110486509
XM_036941227.1 mRNA upstream 3551 44649848 ~ 44653439 (+) False LOC110486509
XM_021558150.2 mRNA upstream 33245 44612906 ~ 44623745 (+) False engl
XM_021558153.2 mRNA upstream 33245 44612906 ~ 44623745 (+) False engl
XM_021558163.2 mRNA downstream 18491 44682056 ~ 44690065 (+) False LOC110486513
XM_021558162.2 mRNA downstream 18664 44682229 ~ 44690065 (+) True LOC110486513
XM_021558159.2 mRNA downstream 35970 44699535 ~ 44731365 (+) False LOC110486511
XM_036941229.1 mRNA downstream 35970 44699535 ~ 44731365 (+) True LOC110486511
XM_036941230.1 mRNA downstream 68133 44731698 ~ 44737852 (+) False LOC110486514
TU1343210 other upstream 451420 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 535068 44118878 ~ 44121922 (+) True G1177750
TU1341841 other upstream 1249048 43406168 ~ 43407942 (+) True LOC110486465
TU1341800 other upstream 1254710 43397749 ~ 43402280 (+) False LOC110486464
TU1343861 other downstream 4503 44668068 ~ 44668459 (+) True G1178363
TU1343925 other downstream 196304 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 256798 44920363 ~ 44926317 (+) True LOC110485188
TU1343973 other downstream 303803 44967368 ~ 44969719 (+) True LOC110486526
TU1344763 other downstream 648765 45312330 ~ 45313033 (+) True G1179156

Expression Profile