RNA id: XM_021558161.2


Basic Information

Item Value
RNA id XM_021558161.2
length 3393
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110486512
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44677879 ~ 44681904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAATCATACACCGCAAAATATTGCGGATACCCATACAACATTACCGTAAGGAGCTGCTTTCTATCTTGAAGATTTAACAGAGAGAATGggcatacctagtcagttgcacaacggAATGCATTTAACGCCTCTGAATCACAGAGGTACTGGCGGCTGCCTTAGTCGACGTCTACGTCATCAGTGCCCTGGGagcagttgttgggggttaactgccttactcaaggacagaacggcagatttttttttcaccttgccgcctcggggattcaaaccagcgacctttcggttactgcccCAACGCTCTAAACCACTATAGGCTATCTGCCTACAAAGTTCACTGCATTGAGCTCAGGCGTCTATAAATTCACCTAAGCGAAATTATCAATATGGGTAGCATGCTGGCCCTTTCTCTTCAGAGTGCCATTCATTCATAATTGATGGGGAGACTAAAATTAAAGTGAGAAGTGAGGCTGTCTCGACCACCTTTCATGTCAGATGGTCACCGGATGAAAGGTAGAGAGATGTGGGTGTGTGAGGTGTAGAGGAGACTGAGACTAGAtaaggagagtggagagagtagaCAGCAGACAATGGATTCAGAAATGGGGGCAAGGCATtgctgctgctgatgatgatgatgtggacAGGAGGACCAGACTGCTGCATTAACAATGAATGGATATTCAATCAAAGCCAGCTCATTCCTGAAGTTGAGAACtgagaaggcagagagaatacTCCTGACCCTGAAAAGTCTAACAAGAGGTCTTCACAGATCATATCAACCAGAGGTGGTCATCTTACCAAGTGAAATGTTTTACCCCATCCAATACCATTAAACACAGTCTCTCATCTACCGCCACCTGTAACAAGGTAGAATGTCCCAGCCTTCCCGACACTGGCAGTCTGAACGTGGGGACAGATCTGATGACTTCTGGAGGCACCtcaaagagggggaggaggagagaggagcagatgTAATGCTCCAGAGGACAGGTGAAGAGATGAGACCCTCTATCACCCTCCGCCCCCCACCTTTGTTCCGCAGCATCGGGCCGTCGGGGCTGTCGGCCAGCCTACCACCCCACCGACGTCTCCGCTCCATATTCCGCAGATCCAGAGCGGTGCTGCCTGCGAATACACACGCCGGGGAGGTTTCAGGAACACACACCCTCCAAGATTTACTGTCAGGCACCCACATCAACACACTCCCACATCAACTGACTCCCAATGACGTAGTGTCAGAGAAGGACGTTCACATAAACACAGActcagagacacaaacacagccCAAGAGACTCATGAGTGCACATGGGCTCACTGTATTAGAACCACCAACAGGACCTCTCACAGATACACTCTCATTCATAGTCAGTGCTGAAAGCAGACAGCAGGGCGGACAGCCTTTTTCTCAGCTTTCCCCACCCCTAAGGACCCATATCAAAGGCAGGGCAAGATGGGGCAGAGCAGTGTCTCCTCTTAAAATGAGAGATGATCttgggactggagagggaggagtgaaagAGAAGCagaaggtgaagaggaggaggctgGACTGGAAAGGAGAGGACCAAGCCAATGACAGATATGTCCCGTCCTTCAccccagagacagagggagatggtggactgtgcCAGTGGTTACAAAGTCTGGGGattggagatagagaggaggaggccaTTTCCCCCAACAGAAGTAAACAGCAGCTGAGTGGGTTCAGAGAGAGGATGGCTGGACACAGAGAGGGGTATTCACATCCAGCAGCCAACCACAGGAGAGACAGACGCCCCCACTTCCTCCCGCCTATCTGTCAGTCTGGCTCCCTACTCCATGTACCCCTGCTGCTTCCCAAAAACTCCCCACCACCCTCGCCATGCACCTCCCCACACGCCCCTTTCCACCCCTTGCCTGTACCCCTCCTCCACCCTTTGCCCTTCAGGAGGAAGTGATATTGTCCAGCAAAGGAAAGGGGTCTCAACTCAAGAGGCCCATTTGTGTTTACTCTGTATGCGGTTTTCTGTCTTGTAACTTCGGCATATTCTGACTGACACTTAGCTTATGTAAGCTTATATAATGTATTTTCATATAGCGCATTACGCCTACACATCCTTAACAAGTCTTATCCAGGTATAATGTATGTTGCTCTTGCCATTTATACTGTACATCCTTTACAAATAATCACATAGTAGTTTCTCTACGTGTAAATAGTTTCTAAGGATATGCTGCCCTGTCACATTTCAATTGCATTAAATTTAGCATGTATAGTTTGAAAGATCCAGGGCGTTGTTGTTTCTCAGGATTAACATCAACAAGTGAACCAACCTCAGCGTTTCAGTAATGGTGTGCCCTGCCTTGACCATCTATAGACCGTGTCCAGATATCCCCCGCAGAGAGCCCCCTCCTCTGATCAGAGAGGAGGCCCATGTTGTTTTTGAGGTGTTTGTTGGGGCCTGAACAGTGCTGTGCTCTGTGTGCAGCCTGTGGTGGGAGCTGCATGTCAGGGCCAGAACACCGGCGTCTCAGTCCTCCTCACTGCCCGCCTCGCACAGCCTGCCGTTTATGTGTTTACCCTCAAACGCAGCCCAAAATGTTTGTGAGTCAGGCTCTTTTTTTCCACCCGCCCCTCCCATTAGGTGCCAAACAAACATTGCACCGGAAATTGCAGGGATATCTGGGATTTTTAAGGAGTCCCAGCAGACAGGGGGCGAGGTCGAGAACAAGGATGCTTTCTGTGACATCTTAGAGGTGaggcggggagggggggggtagttGGCCAAAAGAGAGGGTGTGACCAAGGCTGGGTGGCAAGGGGGTGGGCAGAGTCAGTAAGCTTCATTACGACTGATCAACAGGCACAGGTGACCCAGTTTCTGATGCCCTTTGACCTTATTACATTCCTTGAGCCCACAGTGCGTGCCACTCCTGACCTCGTTTGTCACCAAGCTGACCCGAGCGCTAGGCTAATGGTAACCATTGACGTAGCTGTCATAAGGCCCCGTGTCACATGTAGCAGCAACCTCTTTTTTGGACTGCTAACTGGTCGAGCTTGTTTCCTCTCATTCCTTCTCCCTCCTTGCCCATTCACtccacaggacagacaggacagtggACCCAGAACAACCATTGATGAGGCTGAGATTTTATGTCACCCCCAAACAAAGGAATAATGAATGAGAAAGTGTACGCTCTTTGTTCACAGGGTGCTATCTGGGTTTTGTCCAAGCCTCATCCTCGCCAAACCCCAATGTCCTTACTCATAATGGCCTGGTGACACATATAGTACATGGCACAGGAAAATGGCTGTTGTTAGGTTAAATTGTTCCCAACAGGGAAAGTACAGTAAATAGCCTTGTACTTATTTAAATTAAAGTGAAACAGAAACCAAAGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344319 lncRNA downstream 11773 44665896 ~ 44666106 (-) True si:ch211-106h11.3
TU1344259 lncRNA downstream 18547 44658347 ~ 44659332 (-) True G1178725
TU1344302 lncRNA downstream 21318 44655833 ~ 44656561 (-) True G1178764
TU1344300 lncRNA downstream 21766 44655764 ~ 44656113 (-) False G1178764
TU1344301 lncRNA downstream 21766 44655833 ~ 44656113 (-) False G1178764
TU1344308 lncRNA upstream 41159 44723063 ~ 44724011 (-) True G1178767
TU1344305 lncRNA upstream 43735 44725639 ~ 44731351 (-) False G1178765
TU1344315 lncRNA upstream 58750 44740654 ~ 44741065 (-) True G1178771
TU1344383 lncRNA upstream 90701 44772605 ~ 44774605 (-) True LOC110486518
TU1344394 lncRNA upstream 101533 44783437 ~ 44784245 (-) True G1178831
XM_036941228.1 mRNA downstream 4928 44665763 ~ 44672951 (-) False si:ch211-106h11.3
XM_036939756.1 mRNA downstream 28847 44644651 ~ 44649032 (-) True LOC118938082
XM_036942625.1 mRNA downstream 33906 44642428 ~ 44643973 (-) True LOC118938554
XM_021556251.2 mRNA downstream 50454 44625249 ~ 44627425 (-) True LOC110485185
XM_036941223.1 mRNA downstream 179854 44488948 ~ 44498025 (-) True LOC110486503
XM_021558181.2 mRNA upstream 90698 44772602 ~ 44774634 (-) False LOC110486518
XM_021558185.2 mRNA upstream 105031 44786935 ~ 44803223 (-) False hook2
XM_021558183.2 mRNA upstream 105031 44786935 ~ 44803226 (-) False hook2
XM_021558184.2 mRNA upstream 105031 44786935 ~ 44803227 (-) True hook2
NM_001165188.1 mRNA upstream 168674 44850578 ~ 44852673 (-) False tdx
TU1344299 other downstream 24411 44653072 ~ 44653468 (-) True G1178763
TU1343762 other downstream 132395 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other downstream 147348 44513436 ~ 44530531 (-) True G1178286
TU1343757 other downstream 214653 44462954 ~ 44463226 (-) True G1178281
TU1343292 other downstream 648894 44027312 ~ 44028985 (-) True epor
TU1344306 other upstream 46672 44728576 ~ 44731351 (-) True G1178765
TU1344529 other upstream 287306 44969210 ~ 44981200 (-) True G1178958
TU1344579 other upstream 344611 45026515 ~ 45028613 (-) True G1178982
TU1344593 other upstream 369672 45051576 ~ 45052024 (-) True G1178996
TU1344629 other upstream 403605 45085509 ~ 45087130 (-) True il-8

Expression Profile