RNA id: XM_021558183.2


Basic Information

Item Value
RNA id XM_021558183.2
length 5066
RNA type mRNA
GC content 0.46
exon number 23
gene id hook2
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44786935 ~ 44803227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtaataacatgttcaaataCTTAGTACATTGtctcgaatctaggttgtgccttaaGATTTCGATAAAATTAACAACCAAGGAAGAATTTGTCACTTCTCAAACACCAAACCCCGGCCTAGTCTGCTTCGCAAGCGTTCCGGAAGTCTCGCGATGTTGCGTGcgtctctgggtttagaaactctgtgacaACAACAAATGAAATACTGTCATCTGTTGCCATGACAATGTTCTTAATACGGAGGCTCACCCGGATGGTTTATGGAGCTAAAACGCGAAAGTCAAGCTAGCTAACAGGAGGCCAAGGTTTGTTGACGTGAGCTAAAAACTAAAATCTTAAGTTTGAAGGTGAAAGTCTCGATTGCTAGTGTGCTAACTGCAGAGTATCGGTTAGACAAACCAAAATGAGTCTGGATAAAGCAAAGCTATGCGATTCGTTACTAAATTGGCTACAGACATTTCAGGTGCCCTCATGCACCAGTAAGCAGGACCTGACGAGCGGAGTGGCTATTGCACACGTTCTACACAGGATAGACCCCTCCTGGTTTAATGAGGCATGGCTGAGCAGGAtcaaggaggagagtgaggccAACTGGCGCCTCAAGGTCAGCAACCTGAAGAAGATTCTTCAGAGCATGCTTGAGTATTACCATGATGTGCTTGGCCACCAGGTAGCAGACGAGCACCTGCCAGACATCAATCTGATTGGGGAGTTTGGAGATGTGACTGAACTTGGAAAGCTGGTGCAGTTGGTGCTTGGCTGTGCTGTCAGCTGTGAGAAGAAGCAAGAGCACATCCAGCAGATAATGACCCTGGAGGAGTCTGTCCAGCATGTTGTCATGACAGCCATACAGGAGcTCCTGGCTAAAGAGACAACTGTTCCAGGAAGTCCTGAGACCTACGGGGACTTTGACTACCAGTCCAGGAAGTATTATTTTCTCAGTGAGGAGGTGGACGCGAAGGAGGATCTGGGCCAGCGCTGTCGGGACCTGGAGCACCAGTTGGCAGCCGTCCTGGAGGAGAAGTCGTCCCTGCAGGTGGAGACACAGTCCCTGAGGGAGAAGCTCAGCCTCAGTAACCCACAGGATGCTTCTACCACCATCACTGGCAagaagctgctgctgctgcagagccAGATGGAGCAGCTACAGGAGGAGAACTACAGACTAGAGAACAGCCGAGATGACATGCGTGTGCGAGGGGAGATTCTGGAGCGTGACGTTTTGGACCTCACTCACCGTAACGATGAACTGACCAGCCTCGCCCAGGAGGCCCAGACTCTCAAAGATGAGATGGACATCCTCCGgCATTCGTCTGACCGGGTGAGCCGGCTGGAGGCACTGGTGGAGACATACAAGCGTAAGCTGGAGGACCTGGGGGACCTGCGCAGACAGGTGCGTCTGCTGGAGGAGCGCAACACTGTCTACATGCAGCGCACATGTGAGCTGGAGGAGGAGCTACGCAGGGCCAACTCAGTCCGCACGCAGCTGGACACCTACAAGAGACAGGTCCATGAGCTTCACACCAAGCATTCGTCAGAGGCACTGAAGGCTGAGAAGTGGCAGTTTGAGTACAAGAACCTTCAGGATAAGTATGACGCCCTGCTtaaggagaaagagCGTTTGATCTCAGAGCGAGACACACTGCGGGAAACCAATGATGAGCTCAGGTGTGCACAGGTCCAACAGAAGGGCCTCAGTCAACCAGgTGGATTATGTGAGGACTCTGGCACAGTGGGAAACCTGGCCTCTGAGATGATGCCCACAGAGTTcaaGGAGACGGTGGTGCGTCTGCAGAGTGAGAACAAGATGCTGTGTGTCCAGGAGGAGAGCTACAGACAGAGACTGGTGGAGGTACAGGGTCAGCTGGAGGAGTCTCAACGCAGCCAGAACACCCTGGAGACacaaaacaggttGAACCAGCAGCAGATCTCTGAGCTGCGGTCCCAGGTGGAGGATCTCCAGAAGGCTCTACAGGAGCAGGGCAGCAAGGCAGAGGATGCCATCTCCTCCCTGCTGAAGAAGAAGCTTGAGGAGCACCTGGAGAAGCTCCATGAGGCCCACTCAGACCtgcagaagaagagagaggtcATTGATGACCTGGAGCCCAAAGCGGACGGCAACATGGCGAAGAAGATCGATGAGCTGCAGGAGATcctgaagaagaaggatgaggacATGAAGCTGATGGAGGAACGCTACAAGCGCTATGTGGAGAAGGCCAGGACGGTGATCAAGACTCTGGACCCCAAGCAGCCACCTCTGACTGTGTCTCCTGATGTTCAGGCCCTCAAGAaccagttgactgagagagaccGGAAGATCCAGCACCTGGAGCATGACTATGAGAAGAGCAGGTCCAGACATGAGCAGGAGGAGAAACTCATCATAAGTGCCTGGTACAATATGggTATGGCCCTGCATCAGAAGGTGGTGGGAGAGCGGTCGGGTCCGTCCAACCAGGCCCAGTCCTTTTTGGCCCAGCAGAGGCAGTCCACCCACGCCAGGAGAGGCCTCGCAGCCCGCCACCAGCCCAGATAAGACACATCAACTCtgggggaggatgtggagatTATCGATATCTTAGTGTTCACTACTTCCGTACCCCTACTCTCACTGCTCTGATGCCTTTACTTCTCCTCTTGGTGTTTTGTGAAGAttgctgctgccctctgctgggcATCTCTGTTACAGGATTTTCTGGAGCGTCAGCGATGCAGAGCTACTTACTGCACCTTCAAGTGCATTCAATGCTGCCAAGACTCATTTGAACAAAGATGAGAGAAATGGGTCTAAATGAGAGCTGGAATGAAGGAACATGAAGTGGATAGAAATAAGCTGTGTGACTAATCCTTTGTCATGGAATTCTTAGACAATGTTTCTCATTCAGTCCCTCCATTTCTTTCAAGCCCTATTTTTAGCTATAATGTATTTTATGTTTTCTTAAGGTTTAGATTAGGACATTATGAGAATCAATGCTTTGGAAGGCCACAATGATGACCGAGATGGAAAGGGATGATTTCTGCTGTCAATAGGGCAGGGGTCTTTACCTTCCCCCTACTACTACTTCTATATATTTTCACCCTTTATTATCCAGCCCACTGCCAGGCTAAATAGATATTATCCTCTTACTCTGACATGGAAACACTAAGAGACACCTATGGGTTGAGATCATGGTGAATTTGTGTGATTTTTCTATTCATTTGTGCCCAAGTCATTTGGAGATTCTGGCTTGTGCTGTGTCTCTGACACTTAAATGTACACGGTGAGAGAAACTGGTGAAGCGCTAGAACGGGTGTCATCCGGATCCAGATATTTtgcaggggagggggggggggctggctaACTCGATATACTTTTACAATGACGAAAATCAAGTTTGAAACTAGAAATGcgaatggacctacattcatacagtttattgactgtgtccagctcactaaTAATCATCTAAATGACAGTCGGGAGCATCACTTTTTGCCCATTTTGATGGCGAGGAAATGTTGTTGAAGACTGAATGTGGCCCCCGGGGCAAAATGAGTTTGGCACCCCTCATCTCGAAGAGCTCAATGTCTTTGATATGAGAGGAACACATTTTCTCTGCACACACAGTCATGACCTCTCTTGTTTCTGTGAATGTGTTTTTAGACTTTTCTTTCAAGCTGTATCATCTATTTGTTTTCTCCTTTTGTGATGAGTAGTTTTGTTATAGTTTGAAGAGCAGGAAGAATAGCTTTCTAACCTCAGTGTTTTATGTAGTTGTGTTAGTCTGTATAATAATGTTCAGCAAGGGTACACAGTGTAAAGAAAAGCACTTCCTCCCTTTTGATAATGGTTCATTTCCTTGTGAAAGACTAGAAAAATGTCCCGGACTCTGTTTAACCTATCTACTTTTGTATCAAATTCCTGTTAGGAGTATGGTGTTCACATGTAATGGCAGGCACTCTGAAAGACTAGCAGATATGGGTCCTCTTCTGTCAGGACCATTTGACTGGTAGTATTCACACAGACTATTGAACAAGCTTTTCTTTCAAGCTGTAATATGGGAATTTACTCTATGAATGATTGACTAGACTTCCTTATGGACTACATTTAGTTCTTTTCACTTGAATTTATCCCCTCTAAAGAGTGAAACAGGGTGTTTTAAGAGTTATGATTGGTTGCACACACCACTTTAGACTGATTTGAATGTAGGAAACGCTGGTGCTTGTGAGAACCAGAGTGTGGGGGTATTGATTCACATAGTTAATTGATGTGGGGGGGGTGACTGGACTGGCCACACtggaggttgttactgtgtaatCCGGGAGGGAAGTAAGGTTTCAAGATGGCAATGGTATGTAGCTTTTCTCTCATTCTCAGCAGAAGCAATCAACTATAGATGCTTCATTTCGCTGACACTGGAACGTACCTAGCTAATGAACAATGTGTACTCTTTTTGTCATATTTACAACTGAATTTATGTACATTTTTACCTATCATTTTCTCAAGATGAACCTGTGAAGGACAACACTATTGTTGAACACTACATCTATCTGATTACTTTGACAGTATCTGCGTAAACATGGAACTTCTCTTTGGTAGCCAAACTGCTCTCTGTGACTTGTACCTAACCCTCTGTAAGTGTGTAACTATCTGTGCAATGTTATCTACCAGGCTATGAAACCACAACTGTGTGTACATTTAACTTCACTTAGTGTTTTACTCTTTAAGTAGATGTGTTTATTTGGTATTGAATCGGGAAGTCAGGCTTTTAATTTCAAAGTAGTAAATCAACATTCCAACTGAACTGCTATGTTCTAGCACAGATATGGCCTGTACAATTCAACCTGTCCTTTTTGTGACTGGAAATCCCTCAAATATATTGTCAATGTACTGTCCAATTGCAGTATAACTTGTTGACACTGTCCATTAGCAATATATTACAATTTACATTTACCATCACAAATTGAACATGCAGTTAAAGGACTTAAActctactgaacaaaaatataaacgcaacatgtgaagtgttggtttcatgagctgaaataaaagatcccataaatGGTCTATACACACACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344394 lncRNA downstream 2690 44783437 ~ 44784245 (-) True G1178831
TU1344383 lncRNA downstream 12330 44772605 ~ 44774605 (-) True LOC110486518
TU1344315 lncRNA downstream 45870 44740654 ~ 44741065 (-) True G1178771
TU1344305 lncRNA downstream 55584 44725639 ~ 44731351 (-) False G1178765
TU1344308 lncRNA downstream 62924 44723063 ~ 44724011 (-) True G1178767
TU1344430 lncRNA upstream 31585 44834811 ~ 44835134 (-) True G1178867
TU1344426 lncRNA upstream 34354 44837580 ~ 44837815 (-) True G1178863
TU1344425 lncRNA upstream 43521 44846747 ~ 44847006 (-) True G1178862
TU1344436 lncRNA upstream 44817 44848043 ~ 44848333 (-) True G1178873
TU1344439 lncRNA upstream 47416 44850642 ~ 44852940 (-) False tdx
XM_021558181.2 mRNA downstream 12301 44772602 ~ 44774634 (-) False LOC110486518
XM_021558161.2 mRNA downstream 105031 44677879 ~ 44681904 (-) True LOC110486512
XM_036941228.1 mRNA downstream 113984 44665763 ~ 44672951 (-) False si:ch211-106h11.3
XM_036939756.1 mRNA downstream 137903 44644651 ~ 44649032 (-) True LOC118938082
XM_036942625.1 mRNA downstream 142962 44642428 ~ 44643973 (-) True LOC118938554
NM_001165188.1 mRNA upstream 47352 44850578 ~ 44852673 (-) False tdx
XM_021558188.2 mRNA upstream 53711 44856937 ~ 44864226 (-) True LOC110486521
XM_021558191.2 mRNA upstream 152348 44955574 ~ 44959660 (-) True LOC110486524
XM_021558200.2 mRNA upstream 226538 45029764 ~ 45034405 (-) True LOC110486528
NM_001124362.1 mRNA upstream 282043 45085269 ~ 45087090 (-) False il-8
TU1344306 other downstream 55584 44728576 ~ 44731351 (-) True G1178765
TU1344299 other downstream 133467 44653072 ~ 44653468 (-) True G1178763
TU1343762 other downstream 241451 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other downstream 256404 44513436 ~ 44530531 (-) True G1178286
TU1343757 other downstream 323709 44462954 ~ 44463226 (-) True G1178281
TU1344529 other upstream 165984 44969210 ~ 44981200 (-) True G1178958
TU1344579 other upstream 223289 45026515 ~ 45028613 (-) True G1178982
TU1344593 other upstream 248350 45051576 ~ 45052024 (-) True G1178996
TU1344629 other upstream 282283 45085509 ~ 45087130 (-) True il-8
TU1344653 other upstream 380234 45183460 ~ 45193305 (-) True zgc:171844

Expression Profile