RNA id: TU1343969


Basic Information

Item Value
RNA id TU1343969
length 1714
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110485188
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44878675 ~ 44943951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctcatggacacacagtatagagagagtaaattttcatagagaacaaaggaattccttccacctcacagaacttgagTTGTCGTACCAGTAACAGGAAGAGTCTGATCCTGTCCACCACCTCTCCCACTCTGCCCCACCGCCCACACTCTCCTCTGCCCCTCCCTGGACACCTCGGAAGTAGCCCTCTGGACAGCCCACGCAACTTCTCTTCCAGCACCCCGGCACACTTCTCATTCGCCTCCTCCAGAAGGGCGGATGGTCGACGATGGTCCCTGGCATCTCTGCCCTCCTCTGGATATGGGACCAACACGCCCAGCTCCACGGTAGCACAGATTTACCCTGCTTTGTCTCATCTCATGCATCAAAGGCCTTTTCCTAAAAAACTCTTAGTCTTTTCTTTAAAACTCGCTTTATTCCACTTTCTCTTTTTCCTTTGTCTGACTTActtcgctgtctctgtctcctttttcTTTCTAACACTATGGTACActcttactgtctctgtctcctttctctttctaacACCATGGCACActcttactgtctctgtctcctttctctttctaacACTATGGTACActcttactgtctctgtctcctttctctttctaacACTATGGCACActcttactgtctctgtctcctttctctttctaacACCATGGCACActcttactgtctctgtctcctttctctttctaacACTATGGTACActcttactgtctctgtctcctttctctttctaacACTATGGTacactcactgtctctgtctcctttctctttctaacAATATGGTACActcttactgtctctgtctcctttctctttctaaaactatagtacactcactgtctctgtctcctttctctttctaacAATATGGTACActcttactgtctctgtctcctttctctttctaacACTATGGTACACTCTTACTGTCTTTGTCATTGCCTCGGGGACTtcttcagtttctctctctcattcacacactcatagacacacacaaataccGGCACACACATCATCTCGACCCACATTTTCTCTGTCTTTGATTCTCCTCCCTCAggattctttctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctgtttttctcactTATGTAACACAACATCAGAGGCCTGGGGACTGCTCTCGTCTGgccagtgagagagggaggaacagagggtAGCTAGATAAGAACCAGACCggtgggatgagagaggagagtagaaaagaggagAAAATAGATAGTACACGCTGTTCGGTGCCCAATTCACCACAGGCTCTATTTAGCTAAATACCCCCACTGGAAATAATGCGTCAACAAACAACACATATATATCTGAATGAGCCCAGACATGGAACTTAGTATGGAGCTGGCAGGGtggcttcaaatcaaatcaaattgtatttgtcacatgcgccgaatacaaccttaccgggAAATGCTCActtccaagcccttaaccaacagtgcagtttaagaaagagttaagaaaatatttaccaaataaactaagtgtaaaaagttacacaataaaataacaataaccaagctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgatgaatcaacaacaagtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344025 lncRNA upstream 5523 44914608 ~ 44914840 (+) True G1178511
TU1344022 lncRNA upstream 7370 44912785 ~ 44912993 (+) True G1178508
TU1344013 lncRNA upstream 16642 44903085 ~ 44903721 (+) True G1178502
TU1344011 lncRNA upstream 19133 44900897 ~ 44901230 (+) True G1178500
TU1344010 lncRNA upstream 19729 44900331 ~ 44900634 (+) True G1178499
TU1343968 lncRNA downstream 33772 44960089 ~ 44961764 (+) True G1178457
TU1343976 lncRNA downstream 37704 44964021 ~ 44965492 (+) True G1178465
TU1344053 lncRNA downstream 91360 45017677 ~ 45017927 (+) True G1178536
TU1344060 lncRNA downstream 109358 45035675 ~ 45035971 (+) True G1178541
TU1344068 lncRNA downstream 118634 45044951 ~ 45045202 (+) True G1178549
XM_021558186.2 mRNA upstream 73355 44845151 ~ 44847008 (+) True LOC110486520
XM_036941237.1 mRNA upstream 148039 44760430 ~ 44772324 (+) False LOC110486516
XM_036941246.1 mRNA downstream 18132 44944449 ~ 44956000 (+) False LOC110486523
XM_036941244.1 mRNA downstream 18134 44944451 ~ 44956000 (+) False LOC110486523
XM_036941245.1 mRNA downstream 18135 44944452 ~ 44956000 (+) False LOC110486523
XM_036941243.1 mRNA downstream 18139 44944456 ~ 44956000 (+) True LOC110486523
XM_036941248.1 mRNA downstream 41372 44967689 ~ 44996127 (+) False LOC110486526
TU1343925 other upstream 56180 44859869 ~ 44864183 (+) True G1178425
TU1343861 other upstream 251904 44668068 ~ 44668459 (+) True G1178363
TU1343210 other upstream 714793 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 798441 44118878 ~ 44121922 (+) True G1177750
TU1341841 other upstream 1512421 43406168 ~ 43407942 (+) True LOC110486465
TU1343973 other downstream 41051 44967368 ~ 44969719 (+) True LOC110486526
TU1344763 other downstream 386013 45312330 ~ 45313033 (+) True G1179156
TU1344997 other downstream 536271 45462588 ~ 45462943 (+) True G1179362
TU1345036 other downstream 603119 45529436 ~ 45530128 (+) True LOC110485192
TU1345697 other downstream 1247711 46174028 ~ 46176562 (+) False LOC118936304

Expression Profile