RNA id: XM_036941249.1


Basic Information

Item Value
RNA id XM_036941249.1
length 5625
RNA type mRNA
GC content 0.57
exon number 30
gene id LOC110486526
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44967368 ~ 44996127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTTGGTGCTGTCACATTCTCGGACTCACCTGAGAAATGTCCACCCCGGACCCCCCCATGGGAGGGACGCCTCGGCCGGGCCCCTCTCCTGGACCGGGGCCTTCTCCAGGAGCCATGATAGGACCCAGCCCAGGTCCCCCAGCCTCTGGGCACTCCCACCCACAACAGGGGCCCTCAGGATATCCTCAGGAGAATATGCATCAGATGCACAAACCTATGGAAGGCATACATGAGAAGGGCATGTCTGATGACCCTCGCTATGGACCGATGAAGAGCATGGGCATGAGACCAGGTGGAGACCACATTGGAATGGGAACCCCTCCTAGCCCCATGGACCAACATTCCCAAGGCTACCCCTCTCCACTGGGGGGTTCTGAGCACTCTCCCAGCCCTGTGCCAGCCAACGGCCCTCCACCCTGCCCCATGATGCCCTCTGGTCCAGGTGTCCCCATGGAGGGCGGTGACCCCCAGGCCATGGCCCAGCAGAACCTCGGTGGTGTCCTGAGTGGTGGTTCTGTGCCAGGTGGGGTTGGGCCAGGTGGACCCACCCCCTTCAACCAAAACCAGCTGCACCAGCTCAGGGCCCAGATCATGGCCTACAAGATGCTGGACCGCAGGCAGCCCCTGCCAGACCACCTGCAAATGGCTGTGCAGGGCAAGAGGCCCATGCCAGGGATGCCCAACATGCCCCCTTCCTCTGGGCCTGGAGCGGGGCCTGGACAGCCACCAGCAAACTACAACAGACCTCATGGGCCCATGGTGAATGCTGCTGCTCCATCCAGTGCCCCCCAGAAGCTGATTCCCCCTCAGCCCACTGGGAGACCCTCCCCTGCTCCCCCCTCCGTGCCCCCTGCTGCCTTCCCGGTCATGCCCCCCCAGACGCAGTCCCCAGGGCAGCCCCCACCCATGGTGCTACACCAGAAACAGAACCGCATCACGCCCATCCAGAAGCCCCGTGGCCTGGACCCAGTGGAGATCCTCCaggagagagagtacaggctgCAGGCTCGTATCACTCACCGTATCCAGGAGCTGGAGCATCTACCAGGGTCTCTGGCCGGAGACCTGCGCACCAAAGCCAACATCGAGCTAAAGGCCCTGAGGCTGCTAAATTTCCAGAGACAACTGCGTCAGGAGGTAGTGGTGTGTATGCGTCGTGACACGGCCCTGGAGACGGCCCTCAACGCTAAGGCCTACAAGCGCAGCAAGCGGCAGTCCCTCCGTGAGGCCCGCATCACAGAGAAACTGGAGAAGCAACAGAAGATTGAACAGGAGCGCAAACGACGCCAGAAACACCAGGAATACCTTAACAGCATCCTGCAGCATGCTAAAGACTTCAAGGAGTACCACCGCTCCATCACAGCCAAGCTCCAGAAGGCCACCAAAGCTGTGGCCACGTACCACGCCAACACTGAGCGTGAGCAGAAGAAGGAGAACGAGCGCATTgagaaggagagaatgaggaggCTGATGGCTGAAGATGAGGAGGGCTACCGTAAGCTGATTGACCAGAAGAAAGACAAGCGCCTGGCCTACCTGCTGCAGCAGACAGACGAGTACGTGGCCAACCTCACCGATCTGGTCAGAGCCCACAAGGCTGATCAGGCCCTCAaggataagaagaagaagaaaaagaagaagaagaagAAGCCAGAGAGTGGGGAGGGCCAGCCTCCTGCCCTGGGACCCGACGGAGAGCCTCTGGATGAGACCAGTCAGATGAGTGACCTGCCTGTGAAGGTGATCCATGTAGATAGTGGGAAGATCCTGACTGGGCTGGATGCGCCCCGGGCTGGCCAGCTGGACACCTGGCTGGAGATGAACCCTGGGTATGAAGTGGCCCCTCGTTCAGACAGCGAGGACAGTggctcagaggaagaggaggaggaagaggtggagccCCAGCCCTCCCAGGCTCCCACCGAGGAGAAAAAGAAGATCCCAGACCCCGACACAGAGGACGTGTCCGAGGTCGACGCCCGCTACATCATCGAGGGAGCCAAGCAGGATGTGGATGATGAGTATAACAGTGCCGAGGCGGCGTTCGCCCGAGGCCTGCAGTCATACTATGCTGTGGCCCACGCCGTCACTGAGACGGTGGACAAACAGTCCACGCTGCTGGTCAACGGGCAGCTCAAACATTACCAGaTCAAGGGCTTGGAGTGGCTGGTGTCCCTGTACAACAACAACCTGAATGGGATCCTGGCTGATGAGATGGGTCTGGGCAAGACCATCCAGACCATCGGCCTCATCACCTACCTCATGGAGCACAAGCGCATCAACGGCCCCTTCCTCATCATCGTGCCCCTCTCAACGCTGTCCAACTGGGTGTATGAGTTTGATAAGTGGGCTCCAACGGTGGTGAAAGTCTCTTACAAAGGCTCCCCACAGGCTCGCCGGGCATTCCTCCCCATCCTGCGCAGCGGCAAGTTCAACGTACTGCTCACCACCTACGAGTACATCATCAAAGACAAGCAAGTGCTGGCTAAGCTGCGATGGAAGTACATGATAGTGGACGAGGGCCACCGTATGAAAAACCACCACTGTAAGCTGACTGTGGTTCTGAACACCCACTACCTGGCCCCGCGGCGTCTGCTGCTGACCGGCACCCCGCTGCAGAACAAGCTGCCGGAGCTCTGGGCCCTGCTCAACTTCCTGCTGCCGACCATCTTCAAGTCCTGCACAACCTTCGAGCAGTGGTTCAACGCCCCCTTCGCCATGACCGGAGAGAAGGTGGATCTGAACGAGGAAGAGACCATCCTGATTATCCGTCGTTTGCACAAAGTGCTCCGCCCCTTCCTGCTGCGCAGACTGAAAAAGGAAGTGGAGTCCCAGCTGCCTGAGAAGgTGGAGTATGTGATCAAGTGTGACATGTCGGCCCTGCAGAGAGTGCTGTACAGACACATGCAGGCTAAGGGTGTGCTGCTCACCGACGGCTCTGAGAAAGACAAGAAGGGTAAAGGAGGCACCAAGACCCTGATGAACACCATCATGCAGCTGAGGAAGATCTGTAACCATCCCTACATGTTCCAGCAGATCGAGGAGTCCTTCTCTGAGCATTTGGGATTCACTGGAGGCGTAGTGTCTGGACCTGATCTGTACCGCGCCGCTGGGAAGTTTGAGCTGCTAGACCGTATCCTGCCCAAGCTGATGGTCACCGAACACAAGGTCCTGCTCTTCTGTCAGATGACTTCCACCATGACCATCATGGAGGACTACTTTGGCTGGCGCAACTTTAAGTACCTGCGTCTGGACGGAACCACTAAGGCTGAGGATCGTGGGATGCTTTTGAAGACCTTCAATGACCCCGCCTCTAAGTACTTTGTGTTCCTGCTCAGCACCAGGGCCGGCGGGCTGGGCCTCAACCTTCAGTCTGCTGACACTGTGGTCATCTTTGACTCCGACTGGAACCCACATCAGGATCTGCAGGCCCAGGACAGAGCCCACCGTATCGGGCAGCGGAACGAGGTGCGTGTGTTGCGTCTCTGCACCGTTCAAAGTGTGGAGGAGAAGATCCTGGCGGCGGCCAAGTACAAGCTGAACGTGGACCAGAAGGTCATCCAGGCCGGCATGTTTGACCAGAAGTCGTCGAGTCACGAGCGCCGTGCCTTCCTGCAGGCCATCCTGGAGCATGAGGAACAGGACGAGGTCGGGGCCCCGGGGGGCTGGCGCGCTGGGGGGGCGTTGGAGGAGGACGAGGTGCCTGATGATGAGACCGTCAACCAGATGATTGCCAGGAGCGAAGAGGAGTTTGACCAGTTCATGCGTATGGACCTGGACCGGCGCCGCGAGGACGCCCGCAACCCCAAGAGAAAGCCCCGTCTGATGGAGGATGACGAGCTGCCCACCTGGATCCTAAAGGATGATGCCGAGGTGGAGAGGCTcacctgtgaggaggaggaggagaagatgttTGGTCGCGGCTCTCGCCAGCGCAAGGAGGTGGACTACAGCGACTCACTCACAGAGAAGCAGTGGCTCAAGGCCATAGAGGACGGTAATCTGGAGGACCTCGAGGAGGAGGTGCGTCACAAGAAGACGACCCGGAAGCGCAAGCGAGACCGCGACGACATGCCCGGCCCAGCCACACCCAGCTCCAGCGGTGGTGGCGGTGGTCGCAGCCGTGACAAGGACGAGGAGGTCAAGAAGGCCAAGAAACGCGGGCGCCCTCCGGCTGAAAAACTGTCCCCTAACCCCCCATCCCTCACCAAGAAGATGAAGAAGGTGGTGGACACTGTCATCAAGTACAAGGACGGCAGCAATGGGCGCCAGCTGAGTGAAGTCTTCATCCAGCTGCCCTCCCGCAAGGAGCTGCCTGAGTACTACGAGCTCATCCGCAAGCCTGTCGACTTCAGGAAGATTAAGGAGAGGATCCGCAGCCATAAGTACCGCAGCCTGAATGACCTGGAGAAGGATGTGATGCTGCTGTGTAGTAACGCTCAGACCTTCAACCTGGAGGGCTCTCTGATCTATGAGGACTCCATCGTACTGCAGTCAGTCTTCACCAGTGTCAGGCAGAAGATTgaaaaggagaaggaggaggagagtgagggagaggacagtgaggaggaagaagaggaggaggtggacgaAGGCTCTGAGTCTGAATCTCGTTCAGTGAAGGTGAAGATTAAGCtggggaggaaggagaaggagggcaGAGGGAAGGGCCAGCGCCGGAGGGGCCGTGGCTCCCGGGCCAAACCTGTAGTGAGCGACGACGACAgcgaggaggaacaggaggagGCGGGTTCGGCCAGCGGCAGTGAGGAGAACTGAACTGAACCACTCCTGTTCTGCGAGGACCAACGGCCCACTGAGACCCTCGACTGGAACTTATATATTTTACCTAGATTCTATAGCAGGGAGACAAGCCAGTGGAGAGGGGCCTAGTTTTACCTAGATTCTATAGCAGGGAGACAAGCCAGTGGAGAGGGGCCTAGTTTTACCTAGATTCTATAGCAGGGAGACAAGCCAGTGGAGAGGGGCCTAGTTTTACCTAGATTCTATAGCAGGGAGACAAGCCAGTGGAGAGGGGCCTAGTTTTACCTAGATTCTATAGCAGGGAGACAAGCCAGTGGAGAGGGGCCTAGTTTTAGCTAGATGAGATGATTTTTAGTCAGACAAATGTATTCCATAATTAAAATACACcatcaaataaaaaaattaaaaaatgatagcaaaaaaaaaaacacttacaTATTTAAGCAATCCTGGTATGAATAGCTGGACTGTATGTCTTTTTGCCTTGTTGTTTTCTCCTGAAAGTGATTTAAGGTGGACAGGGTTTGATTAGCAGATTGATCGTGGACCACAGGGAGAGAGTGCTGACTTTTTAAGTGAGTTTGTTTTGTCGTTTTGTTTCCTTTGAGATGGAGCTGTGTGACCGGAGTCGCTGTGGTTTCTAAGTCCCCTGAATGCATGTCGTTTGGTCTGTGGAAATGCACCTGGGTGTGTCGTTCTATTATATCTCTGTTTAATTTAAGAATACAAGTGAGATAACGGTACGTTCCCCCTTAGGCCTTCCTCCGGCTACAAGTGAGAAGGGAAGGGCGGGACTCTGTCTCGCGTCTGTGTCACTGgattccaaaaagtacaataaagGTGTCTCGTAATTAAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343976 lncRNA upstream 2202 44964021 ~ 44965492 (+) True G1178465
TU1343968 lncRNA upstream 5930 44960089 ~ 44961764 (+) True G1178457
TU1344025 lncRNA upstream 52854 44914608 ~ 44914840 (+) True G1178511
TU1344022 lncRNA upstream 54701 44912785 ~ 44912993 (+) True G1178508
TU1344013 lncRNA upstream 63973 44903085 ~ 44903721 (+) True G1178502
TU1344053 lncRNA downstream 21550 45017677 ~ 45017927 (+) True G1178536
TU1344060 lncRNA downstream 39548 45035675 ~ 45035971 (+) True G1178541
TU1344068 lncRNA downstream 48824 45044951 ~ 45045202 (+) True G1178549
TU1344073 lncRNA downstream 55037 45051164 ~ 45051364 (+) True G1178554
TU1344075 lncRNA downstream 70271 45066398 ~ 45101821 (+) True G1178555
XM_036941246.1 mRNA upstream 11694 44944449 ~ 44956000 (+) False LOC110486523
XM_036941244.1 mRNA upstream 11694 44944451 ~ 44956000 (+) False LOC110486523
XM_036941245.1 mRNA upstream 11694 44944452 ~ 44956000 (+) False LOC110486523
XM_036941243.1 mRNA upstream 11694 44944456 ~ 44956000 (+) True LOC110486523
XM_036941242.1 mRNA upstream 23743 44878714 ~ 44943951 (+) False LOC110485188
XM_021558198.2 mRNA downstream 5431 45001558 ~ 45015370 (+) True LOC100135849
XM_021558199.2 mRNA downstream 23180 45019307 ~ 45025593 (+) True LOC110486527
XR_005035812.1 mRNA downstream 27070 45023197 ~ 45023294 (+) True LOC118938604
XM_021558201.2 mRNA downstream 30062 45026189 ~ 45028620 (+) False LOC110486529
XM_021558202.2 mRNA downstream 30072 45026199 ~ 45028620 (+) True LOC110486529
TU1343969 other upstream 41377 44920363 ~ 44926317 (+) True LOC110485188
TU1343925 other upstream 103511 44859869 ~ 44864183 (+) True G1178425
TU1343861 other upstream 299235 44668068 ~ 44668459 (+) True G1178363
TU1343210 other upstream 762124 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 845772 44118878 ~ 44121922 (+) True G1177750
TU1344763 other downstream 316203 45312330 ~ 45313033 (+) True G1179156
TU1344997 other downstream 466461 45462588 ~ 45462943 (+) True G1179362
TU1345036 other downstream 533309 45529436 ~ 45530128 (+) True LOC110485192
TU1345697 other downstream 1177901 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 1178355 46174482 ~ 46176562 (+) True LOC118936304

Expression Profile