RNA id: XM_021559463.2


Basic Information

Item Value
RNA id XM_021559463.2
length 3505
RNA type mRNA
GC content 0.38
exon number 1
gene id zgc:162612
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45111643 ~ 45115147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAACGAGAGGGGATGCTGGACATCGTGGAAGACTCGCCGTGCTTCATAACTTTCTCAGCCTCCCTTTTCTCTGTTTAAGGCTAAAAGGTTGTTCCATTTTGTGTTTGTTTGGAGATAAAAGGCTTTGGATTTTTTTAAGGGTTGTTTTTTCCTCTTGAATGACTAACGTGAGAGGGGACTGGAGCGCACATATTTTAAGCTTGTTTTTTTTGTGAATGGAGAGAGCAAAGCCTTGCGCGTGAGCATCTATCCCTTTCAAATAACTGACCCTTTCCCACCTTGTTGGGGCAGGTGATATTGGCTCTGCACGTGGACTATGACATTGGACTTGGAGCCCATGGAAGATTTTGTTATTGACGTAGTAGGAGAGGGACTCAGGGATAACGGAGAGGAGCATCTCGTGTCCTTACCTTTGGAAGAGACGAGAAGTGCAGAGCATGAACCCGAAACGTTTTTGTCTTCTAGTGGGCAGGATGAGGATAGGGACGACTACTCACCCACATCGAAGTGTCCTCCAGCAGCAAGTAAAAGCCCGGCGTCGGTAAAGCCTCCGTACTCCTACATCGCTTTGATAACAATGGCCATATTACAAAGCCCAAAAAAGCGACTTACCCTCAGCGAGATATGTGACTTTATCAGCCACCGATTCGTTTATTATCGTGAGAAGTTCCCTGCCTGGCAGAATTCCATCAGACACAACCTTTCGCTCAATGACTGCTTTGTCAAAATGCCCCGGGAGCCTGGTAATCCAGGGAAGGGAAACTACTGGACGCTAGACCCCAATTCTTCCGACATGTTTGAGAATGGGAGCTTTCTGCGTCGAAGGAAGAGGTTCAAACGCCAGCATTTTCGTTTCGGGGTGCTCAAGGAGCAATCCCTTGAGCCCAGTGGCTTTCACAACTTTTATGGTACTTATGGACTCGGCACAGCGGGTCTTCAGCTACCCAGTTTGGAGATATATCCATTCGGCTTCCATCACCATGCGCACTCATCATGCGCTCCCACCATCCCACCTGTTAGCAGCCTGCTACCGGCTTTGTCGAGCCTATTTACCCGGAACTCTTTCGCTGCCAAGGCTTTTCTTCAATCACAACAGCCTGTTACTATCGGGTCCTTCAATCCGAGCCGCTATGCCACCTTTTCTTCCGCTTTGACCACCAGCGCTCCATATGCGTCCCCTGCGCTGTTCCACTCCGCGGCGTCTCCACATCTCGTCAGTTTACATGAAGAATATCAGAAATTACAAACTCAGCGCAGCACCTCTGACCTGGCTAAATGATCAGTGCTTGTGAATATTTGACTTGTGTTTCAGACTTTAAATTGTGTATTTGTATCTCAGGTGATAGAGATTTTTGAAGCTCTTGTGGAAACACAGGTATTTGGCAAATGGTAATTGGATGGACTTGTTGATCTAGGCCTATTTGAAGAGTTCTTAAGAATGCTGTAGATGTATGCCTTGCATTGATTACATTTGTCATAGCATCTTGCGTTTTTCTTTCTAAAGTATGAAATTAAATTTGTCCATTGAAATGCAAATATTTAACTGACGAGTTTCCTTTTACATTTGGAAAGAAATAAAGTGAATtatttaaaacaatatatttaaCTCAGTCATTTTTCTTATAGGCCTTTGCGTCACTGACCTGTCAATATTGGCAAAATTGAAGATCTGTAATTGATGCCTTTAACAACTGATTATTGCATAGCGTATATCTTTAATCAGTGGAAATATAGCTGCACATTTTTACCTATAGCAGGCCTAAATGCGCAGTGAACTTGATTGCATCTTTCAACAGGAAAACCATTAAATTCAACATTTTGCTGAGTGTGTAGATGATGCGTGGGTTAAATTATGCTCAGAACTTTTTACAAAATTAGGGTCATTTTAGTTTGTCTGGTTAGCATTTCTCTAATAATAAAATATTATTTCATTGAATTATATGATGTTTAGGCCTACATGTAAAACATGTAAGCCTATATTAAGTCAAATAAAAATCTTAAAATAATTGTCACATTTTGACGGTTATAGCTTTAAAAGTGTCTATCGAAAGAGCGACTGAGGATCAAGCGATGTGCGGAATCAAACTATATGAAGATCACATGAACGAGATGCAACATTGTGTTGACTCTAATCTAGGCTAAATCCAATATCCTGGAATGTTAGGACTACATTTTAAGGATTTTCTGATACTACAattgaaacattttatttttgttcgtttttttatGGCTACAATATAGGCCCTACTgcaattatttatatattttgaaaATCTCTCAATATGGTTGTTCTGCAGCATCTCGCTGTCGTTTGCCATTCATCCTCAAAAACTGACGCTTAAACACATTGTAAATGAATGCTCTTTCTAAATTTGAAGTCTAGAAGTAACGGTCTGTGCAGCTGCGCAGCTTTCAGATTGTCAGTTGAGTTACACCACATCCATCCATTAGTTCAACATCGTATTATAATTGCCTGATTTTGCGTCATGGGGCCACACAGCCTGCTCGTTCCAAAAATGGAAAAAATCTGTGCAACACATTCAAAGACTTCATATTTTCATGTCAGATTATGAGGTCATTTCTAAAGCCGCATTTGGTTGTCTCTCCAAAGCATTCCTTataagattttttttatataaatattttaATATGTTTGCATGGGAGATGTAGCTTGAGCCTATAGCTTACTATTCAAGAGGTATACCACAAACGAACCAGTTGAGGATTTATTCAAATATGTGTTTAAATAGACATCGTGATTTAACTCGGTTTTGCTAGAACCAAATTCGTGGAATATAGTTCTATTAGTCAGAAAATAAAACCAATATTACATTCTAAGAAAATTAAAGCCCTATTAAAGCCCTGAGAATTATGGATGTTTTAAAACAATATTTTAAAGTAATGAATAACATATCTTCATAACTTGATAGATATCACAATCAAGTTAAATTGTGATACTGTATGCTAAATATTTGTGAACATAAATGGAACAAAACATAAAAGGAATATAAACGTTTCCTTACACTCTTAATATCGTTTGAAATATCTGGAACCACATTGGAGATGATTCTGGTACTGTTTAAACCCAAAGTAACAGACATTTCTCATGGATTATAATGAAGATTGAGTATTTGAGACAGATTATTCATGTAAATGTTGAATTATATAATTAACCATATTTGTTGTTTTCTTTTAACGTCCTTGTTTAGATTTATTGTGTGTTTTTCTTTGACTTCTTTGCCAGACCGTGCTGTGTTACACTGAACATGACAGGATGAAAATAATGTTAGGATTCAAGGGAGGAAAGTATTTATTTCATTCTATTCTAAGTCTAGTTTAGATTGATGACTACTCTAAAGCTTTTGGAAAGGGCTGATGGATAGAAGTACAATATCCAATTCAGTCTAATGCCGTTTGGCAACCATTGAAggagttaaataaataaaaacattgttgCCTGATGGCGAATTGTTAAGTTGCTTGACTGAGAGAGAAATACACAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344075 lncRNA upstream 9822 45066398 ~ 45101821 (+) True G1178555
TU1344112 lncRNA upstream 24435 45085263 ~ 45087208 (+) True G1178587
TU1344073 lncRNA upstream 60279 45051164 ~ 45051364 (+) True G1178554
TU1344068 lncRNA upstream 66441 45044951 ~ 45045202 (+) True G1178549
TU1344060 lncRNA upstream 75672 45035675 ~ 45035971 (+) True G1178541
TU1344147 lncRNA downstream 31076 45146223 ~ 45147982 (+) True G1178617
TU1344160 lncRNA downstream 50903 45166050 ~ 45166423 (+) True G1178630
TU1344162 lncRNA downstream 52129 45167276 ~ 45168172 (+) True G1178631
TU1344188 lncRNA downstream 78858 45194005 ~ 45194242 (+) True G1178655
TU1344191 lncRNA downstream 85078 45200225 ~ 45201070 (+) True G1178658
XM_021558201.2 mRNA upstream 83023 45026189 ~ 45028620 (+) False LOC110486529
XM_021558202.2 mRNA upstream 83023 45026199 ~ 45028620 (+) True LOC110486529
XM_021558199.2 mRNA upstream 86050 45019307 ~ 45025593 (+) True LOC110486527
XR_005035812.1 mRNA upstream 88349 45023197 ~ 45023294 (+) True LOC118938604
XM_021558198.2 mRNA upstream 96273 45001558 ~ 45015370 (+) True LOC100135849
XR_002468078.2 mRNA downstream 20533 45135680 ~ 45140940 (+) True LOC110486534
XM_021558210.2 mRNA downstream 36935 45152082 ~ 45154732 (+) True hmox1a
XM_021558229.2 mRNA downstream 108322 45223469 ~ 45268420 (+) False LOC110486541
XM_021558228.2 mRNA downstream 108324 45223471 ~ 45268420 (+) False LOC110486541
XM_036941255.1 mRNA downstream 243592 45358739 ~ 45451742 (+) True usp43b
TU1343973 other upstream 141924 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 185326 44920363 ~ 44926317 (+) True LOC110485188
TU1343925 other upstream 247460 44859869 ~ 44864183 (+) True G1178425
TU1343861 other upstream 443184 44668068 ~ 44668459 (+) True G1178363
TU1343210 other upstream 906073 44174384 ~ 44205570 (+) False LOC110486491
TU1344763 other downstream 197183 45312330 ~ 45313033 (+) True G1179156
TU1344997 other downstream 347441 45462588 ~ 45462943 (+) True G1179362
TU1345036 other downstream 414289 45529436 ~ 45530128 (+) True LOC110485192
TU1345697 other downstream 1058881 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 1059335 46174482 ~ 46176562 (+) True LOC118936304

Expression Profile