RNA id: XM_021558224.2


Basic Information

Item Value
RNA id XM_021558224.2
length 4345
RNA type mRNA
GC content 0.45
exon number 20
gene id pik3r6b
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45200981 ~ 45213655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtcctaaccgactttccaaaactatagtttgttaacaagacatttctggagtggttggaaaacaagttttaatgactccaacctaagtgtatgcaaacttctgacttcaactgtacattttatgTATGGTCCTGGGAATCAAGCCCACTACCCTAGCATTACAAGTGccctgctctaccaactgagctacagagaaaGTTGTATTATTTTGCTAATTTGGTGTTCTGTGTACTGTAATAGTCAACTCAGTCAAAAATATTTGGGCTGCATTATCTTTTCTCCTGTTTTATTTTTTGCCAACCTTGAGTGGATGCCTTGTGATGCATTGTACTTGTGTGATGATGTCTAGACTAAACAAAAGGGATTTTACTGTTGTGGTGCTGTGAGAAAATGTGTTTCACTCAAGATATTGTTCAGTCCTCATGGGCTTCCATGGGCATTGCTAGCAGTGCACTGTACATTTCTTATCATGTCTGAAGATTCATTAATTGAAATGTTCTCTATGCTATAGTGTCAACATTTAACTTTTCAACTATGAATGGCCCTGTAGACTCCTCAGTCCTCATTGACAAGTGTACAACTtgaataaatacatatatttaaATAAAGAAATCATATTTAACAGGATTCCAGACTGTTTAATTTATTTCAGCTAAGCAATAACATAAAGGAAGTGAACATTGTGTCGCGCGTCAACCTGCCTACATATTACAAAGAAGGTGTGGCCAAATATATTGTTTACGTTTCTGTAGCCAACTCGATTAGCCAGGAGGGCTGACGTGCGATCCACGTACCTAAAGGGGCTACTTGATAGAATGTGGTTAGTGAATTGTCTTTTTTACCAAACGTCCATCTTCGAAAACAACTGTGTACAGTGTAGCTGCTGCTGTTCATCAGTCAATTCGTCCACATCCAGTGTCAGCGTACAGTGACAAAATGCAAGGCAGGTGGGAACCCATGATGCTGAAATGTGATGTTTGACCTCCAAATTCTCTTGGGATGAATAAGAAAACAACCCCATGGAACCCTCCAGTAGCTTCCACTATGTCGTCAGCAGTGGAGGCCAGTATGTACAACAGTATCCAGGCCATCCTCAGACAGGCTGCCTCCTCATGCAACAAAGGTATGCTGAGGTGGACTCTTCATAAGAAGGTGGAGACCCATCCATCTAACAGTGTCTCACTGGTCAGGGTTCTGGTCAAAGAGCTAGAGAAGGTGGAGAGGCTTGACTATAAGATGCATGTCATTCCATTGCTTCACACTCTCAACTACGTTATTATTCAGCAGCAGTCTAGCCACATTCCATGTAAGCTGTTTCAGAGAGTGTATGAGTGCTTCAAAAGGCTCCTAACACTTCCAGAGCCCTACTGTACTATCGCACTGAGATACGTGAGAGGCATAAAGATGGAGCAGATCACACCAGGAGCTTTGTATCAGAGAAGGGTGATTGCTGAGCAGAGCCTAAGGAACAAACATTTCCCCCAGCAGGAAAGGGTATTTGTGTTTGCAGACCCGGCTGTGTTCTCAGGGTCCCTGTGGCAGGCGGTGAGGGCAGACCTGGTGCTGGCCGGCCACCAAAGTGACACACTGGCAAGACTGGTGCTACTGCACACTCTGCAGGCTGGACTGGGGAAGGCCTGTCATGGTCCCATACTGACTCAAGCtctggagGATCTAGGAGAAGATGTGGAAAAGTACTTCCAGGAGGTGGTGTTAGCTGTAGAGCAGAGTATAGAGAACGGCGAGGCAGGCCGTGACCAGCACAAAACCAGGCTACAGCACATCTACAGTGACATCCTGACCTCTGCTAACCAAGacccAAAGGCCCGTGGCTCTCTTTCTAACACTCCATTGCCCTCGCCAGAGATTCACTTCCACCTGTGGACAAACGAAGAGGAGCTGTGGAATGAGCTGGTGAACTTCACCCTAAACGTTTCCACCTCTGAGCGGAACTCTATGTaccaggaggaggaagaggaggatgtttcTAAGAGGGTTTCCCTCCTGTCTGTTGATAGTGGAATAGAGAAGGACCTGTCTGACATGGAGGAGCGGGAACAGAGGAATCCATTCACCCGGTCACGGTCACCGTGTTTCAGAGGGAGAATGAAGCCAGAAGACAAAATGGCTCTGGTACAGGAAAACATCAAGGGGCCCGCCTGTAGCACCCCTCTCCCTAAAGAGGAGGGGAACCTTACTGCACGCATAGTGATGATGGGAGATGACAGGGTGCTGGGGAGACTGGCCAAGGCGTATCACTCCATCAGAAAAAGGGAGGCAAAACATCTCATCTTGACCAAGAGAGTGAacctacagatatactacatccctGTCACTGATGAGCCTATCGTCAATTCACCTGAAAGCACATCACAAGTTGGAGACAGGTTGTCTCTAGCCTCGTTCTTAGGAAGGGTCGATCCCTGGTACGAAAGCAACATCAACAGTTTGGGAGCCATGATTCCAAAGCTGGCAGGAACGTCCAGTCACAGCAGGTCATCAGAACCCAACCACTTCCTTGTGGACGTCCTCTCCTACTACCTTCGCTGTGGCATACAGCCTGTCCACTTCACACTCTACTCTGTCAAGATCTCTGTCTCTGGCCAGACTGGCAGCCCTGTGAACGAGGTGTTTGTGTCCCACCTGGATGCTGAGTTCCCGGAGTTCAAAACACTCAGAGAAAATCTAAAACAAGAGAGATCTAGTCTGCGACGAACAAGGAAGACACATGGAACCTGTGGAGCGGTGGTTTCTATGAATTACACTAAgGTCTCCTTGAGCAAACAAGAGGTTGTCCAGGGAATGTCAGTCATGACATGTGGAGTGGGCATCAGTGCAATATCACCCAATGAAACAGAAGGTCTTGATTCCCTAACTGTCCATTTTGACAGTACAAATCCAAGATGCTGCACGGAGATCAGAACCCAAAACATTAAAATCAGAATCCTGGAGGATAAGACCTTCACTGTCTGTCTGGACAAAGACTGTCGCAGGAAATACACACATGTGCAAAGCATTGAGATCTCTCCATGTTTGGATCCAGGCTATTGCCTCCAGACAAGTTCCAAGTTCagtgtgggagaggagagggaggcggGGCTGAGCAAATACATGTGCAAGATCCTGCCTCTGCCAATCAACACCTTCACTGGCATCAACCACTGAGGGGATTTGATTATTAAGCCCGGGCTCTGTCCCAGGCGTGAGCCAGGTGCTCCGCTCTGGCCAACGGCGAAGTaagctcaaaacaaaagtgacatcGGTTATGCCcgtggagtaatgagtaggattctgtgttttGACATGCGAAAGGGATTTATTTTGATTAAAAAAGTGttttatctgccttcccaatgaaatCTAGTTTGAAAATTCTATCATATATTTTATGAAAAGAgctgtatgtatttttttaaatatttttattatgatccccattagctgttgcaaaagcagcagctacttttcctgggttccactcaaaacatgaaacatgacataatacagaatattaatagacaagaacagctcaagcacagaactacataaaaaaaactttttggaatacacacgtagcctacatatcagtacatacacGCAAACTATCTAGGTGAAATAGGGGGGAGGTGTTGTGCCGTGAGGGGTtactttatctgttttttttaaaccaggtttgctgtatATTTGAGCGGTCTCTcctttatatcagccctctgtgtcacgcctgctcccactctTACCTCCTGGCACTCGAAGGTGCCAGGCTCTCCAGCAAAGCACACTCCTgccatcatcattacacacacctgcctttCCCCCGTCACGCGCGTCAGAGATTTTTGgattcacctggactcaatcacctctgtcattaccttccctatatttgTCTGGTTCcccgctctgttccctgcttctgcATTAATTGTTGTTTGTCTGTGTTTACCCGTGTGCTGACACTGTTCctgattaaatgtttgactccccgtacctgcttctcatctccagcatTGGTCATTACACTGATaagcaagacgtgccgctctgttctgggccatgtgttttgaccatgacagttgaCAATCTAAGATAACgcaaagtaatttagtctcctcaacttgttcaaaagccacaccattcattaccagaggtttagaacttagggaatgatttgtaccaaatacaatgctcttagttttaaaCATGTTCACTACCAGTTTATTACTGACCACccaacagactgcaactctttgtttagggtttcagtgacttcattagctgtggttgctgatgtgtatatggttgaatcatcagcatggacacacatgctttgcttaatgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344654 lncRNA downstream 19240 45181424 ~ 45181741 (-) True G1179056
TU1344672 lncRNA downstream 21413 45179361 ~ 45179568 (-) True G1179074
TU1344667 lncRNA downstream 25615 45174939 ~ 45175366 (-) True G1179069
TU1344662 lncRNA downstream 54318 45146464 ~ 45146663 (-) True G1179064
TU1344577 lncRNA downstream 179234 45020298 ~ 45021747 (-) True G1178980
TU1344709 lncRNA upstream 53678 45267333 ~ 45268407 (-) True G1179106
TU1344724 lncRNA upstream 55389 45269044 ~ 45269384 (-) True G1179119
TU1344726 lncRNA upstream 56237 45269892 ~ 45270099 (-) True G1179121
TU1344818 lncRNA upstream 131560 45345215 ~ 45345426 (-) True G1179208
TU1344819 lncRNA upstream 138915 45352570 ~ 45352902 (-) True G1179209
XM_036939757.1 mRNA downstream 5004 45194711 ~ 45195977 (-) True LOC110485191
XM_021558217.2 mRNA downstream 7666 45182660 ~ 45193315 (-) False zgc:171844
XM_021558212.2 mRNA downstream 26959 45166694 ~ 45174022 (-) False tom1
XM_021558230.2 mRNA upstream 87078 45300733 ~ 45333031 (-) False LOC110486542
XM_021558231.2 mRNA upstream 93415 45307070 ~ 45333032 (-) True LOC110486542
XM_021558233.2 mRNA upstream 267345 45481000 ~ 45484678 (-) True mchr1b
trnas-aga-60 mRNA upstream 312934 45526589 ~ 45526670 (-) True trnas-aga-60
NM_001124180.1 mRNA upstream 438241 45651896 ~ 45653968 (-) False LOC100135782
TU1344653 other downstream 7676 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 113851 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 148957 45051576 ~ 45052024 (-) True G1178996
TU1344579 other downstream 172368 45026515 ~ 45028613 (-) True G1178982
TU1344529 other downstream 219781 44969210 ~ 44981200 (-) True G1178958
TU1345280 other upstream 315781 45529436 ~ 45530114 (-) True G1179619
TU1345282 other upstream 318203 45531858 ~ 45532662 (-) True G1179621
TU1346367 other upstream 1299802 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1669773 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1669773 46883428 ~ 46915018 (-) True LOC110486590

Expression Profile