RNA id: XM_021558228.2


Basic Information

Item Value
RNA id XM_021558228.2
length 4612
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110486541
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45223469 ~ 45268420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCTGTTCAAACAGTAAGAGCGTCAGAAAGGGAATGGGACAGACAagagacagaggtagacagaGGTGTGACTGAGTGGAAGACAGAGTCAGGGAAGCTAATAGCGAGCTGGTCCTCCAATTTATGTCTAGAAACCCAGAAAAGGCAAACTAGCGGTAGATTTTCGTGCGTAAAAAAGAGAGTAGGCTGCCCTCTATATTCTTAAGTTTTACAACACTTCTCTTCCAGGCTGAACAGTTATTCGGAGGTAGTGTCCTCTGTGGAGTTTTCTTTGTCTCCACAAGTGACACTAAAGAGCACGGATTACAATGATAAGGATTTTAGAGGTTTGGGTCACCTCGGTGGCCATTTCTCTGCTGGTTAAGGGGGCTCTTGGAGGTTATGGGATGAGTATGTTTGCTGCCCAGTCGTCCCCTCCAGACCCATGCTATGATGAGAACGGCAACCCCCGGAGGTGCATCCCCGATTTCGTAAACTCTGCTTTCGGGAAGGACGTGCGCGTCTCCAGCACCTGTGGAACCCCAGCCTCAAGGTACTGCGTCGTGACCgagaagggtgaggagaggaCTAGGGATTGCCACACCTGCGATCCAGGGGACCCAAAGAAAACTCATCCACCTGCGTATTTAACTGATTTGAACAACCCTCATAACCTCACCTGCTGGCAGTCAGAAAACTATGTCCAGTATCCTCAGAACGTCACGTTCACTTTGTCATTGGGTAAAAAATTTGAGGTCACCTATGTGAGCTTGCAGTTCTGTTCACCCCGACCCGAATCTATGGCTATCTTTAAGTCCATGGACTATGGCAAATCCTGGGTTCCTTTCCAATTCTACTCTACCCAGTGTAAGAAGATGTATAACAAGCAGAATAAGGCGGCAATTACCAAGCAGAACGAACAAGAGGCGATTTGCACAGATTCTCACACGGACATGCACCCGCTGACAGGTGGGCTCATTGCGTTCAGCACCTTGGATGGCAGACCCTCGGCGCACGACTTCGACAACTCTCCTGTGCTGCAGGACTGGGTGACAGCCACCGACATCAAGGTTACGTTCAGCCGACTGCACACGTTTGGGGATGAGAACGAGGACGACTCGGAGCTGGCTAGAGATTCCTACTTTTACGCGGTATCAGACCTGCAGGTTGGCGGGCGGTGCAAGTGCAACGGCCACGCTTCAAAGTGCGTTAAAGAAAGGGAAGGAAACCTGGTATGCGAGTGCAAGCACAACACCGCGGGGCCGGAGTGTGACAGGTGCAAACCTTTCCATTATGACCGTCCTTGGCAGCGCGCAACCGCAAGAGAGGCAAACGAATGTGTTGCCTGCCACTGTAACCTGCACGCCCGGCGCTGTCGTTTCAACATGGAGCTGTATAAGCTGTCTGGGCGGAGGAGCGGCGGAGTCTGTCTCAACTGCCGCCACAACACGGCCGGACGCCACTGCCACTACTGCAAGGAGGGCTTCTTCCGGGACATGTCCAAGGCCATCTCCCACAGGAGGGCCTGCAAAGCGTGTGATTGTCATCCAGTTGGCGCAGCCGGCAAGACCTGCAACCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACCGGCATCACCTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCTCCTATCGCCCCATGCATAAAGATTCCAGTTGCATCGCCGACCTCCACCTATACCAGCTCTGAAGAGCCCTTAGACTGTGATTCTCACTGCAAGGCATCCAAGGGCAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAAGACTATGCTGTCCAAGTGCACGTCCTCAAAGGAGACAAGGCAGGGGAGTGGTGGAAGTTTACCGTGAACATCATCTCCGTCTACAAGCAAGGTGAACAACGCATCCGACGCGGCGACCAGCTCCTGTGGGTGCGTGCCAAGGACGTGGCCTGCAAGTGCCCCAAGATCAAGCTTGGCAGGAAGTACCTGCTGCTGGGCACGGATGACGACTCCCCCGGGCAGACTGGCGTGGTGGCGGACAAGGGCAGCCTGCTCATCCCCTGGAAGGACCTGTGGGGCCGGAGACTGAGGAAGTTCCAACAGCGCGACAAGAGGGGCAAGTGTTAagaggagccagagaggagagaaagagagggggctcaCCTCGAGTCTGAGGAacacaggaggaggagaaagaaagaggaaacaccagagggagagaggaaagaaggagaggtgaagtgaacagagagagagagagagagagagaggaagtgactgagtgCTGCTGCTTTGAGTGGAAGAAAAAAGAGAATATTAGTTTTAGAAACGTTCGTGTGAAGGAGCTATTTTTAAAATTGCTGTTCTGTTTGTCCTTCAAGGTTTGTTTCATTGTGGAATTGCAGAGTTTGCACCTAATATTTCAGATAAGTTActtattttttgttttattcaTGATACCGTTATTTTTATATTTCCAGTTCATGTCTACAGAACATCAGAAAAAAATCTACTGTATCACATttctgtgtttaaaaaaaaaatatatatatacatatatatacacacatatatatatatatacatatatatacacatatatatatatatatatatatacacacatatatatatatatatatatatattgtttaaaGTTTTTTCTAGCAAGCTGAGGTGGCACGGCATGGCTTAAGGGGAATCTCTCATGTTTAATGAGAGGCTCCTGCTTGCCAGGCCTTGTCAAGATAAACTGTGTAAACTGCAAAGAGTGTTAACACGTTAAATTGATCATTTAAACTAGGTTTTACTGTGGTTTCGGAATATACTTGTAaaaatgggagaaaaaaaaaacagaaacaaaaacaAGCCAGCTATTGCCAGTTACCTTTCTTCTTTAAGAGCTCCTCATGTGGTTGTTACCTCATTATTACTGCTAACTATGTAATCAAAATGAAAGTACCATGAAGAAGTTGCTCCTCAGATACTAGCATTGGGAAAGAGTCTGTTAAATGATACATTTCCTTGCCATCCTGACAGTGTGGTTGTGACCTCAGCAAAATAAAAGTACCAGTAGGCATGATATAATTATACAATATTTTTGTATTTAGACAGCACTCCGTTCTCAACTAGAAGAACTAAAATAGATGAGTTGACCGTGCACTTAATGTTTAGTAATTTAGTATTCAACAGTATTCAGAACATATAAGATATGTTCAGTGTTTAATGGCACCTTGCAGGATACAAACTAACATACTGTATGGTTTTAGAAACATCATTAAAGAACTAATGTATGTCCATTCATGATTGTTCAACCTGAGATCACACATTTCACTGTTTATGTGCTGCCTTTGGCCTTTGGTCCTGGAACCTAATGTCCACTGACTCTGTGTCATTGATtgatgcatttggtttgctatcCTGCTCACGTTTGTTAAAATACAAAGTACTGCttgaacatcccactgagcaTTGACCTGTTTCTGCTGGTAAAGGACtgatcatgggggggggggggggggggggggcattctgATGTCTTCAACAGTGAATCACCTCATGTAGTTTGATAAGACCTATCAAAATGAACCTATGTTTTGTTAAAATAATAGATGCATGCTGACTACTTAGCTAAGCTTAGCTAAGCTAACCAAATTGTGGAtgacagtatgtacagtatgtatatgcTGTATAAAGATACAGGCATTATGTTGTAAAAGAAAACCTGTGGGGTGATGAAATATCACAGGAGTCAAGCTGTGTGATCAACACACTGTGTCAGCATCTGATTCTCACTTCAAACCTTGCAGACATTCCATTTTCAAGACGTTACTTGGTACTCAAAAGGGGTGACCGGCTGTTTAAATGTTATATAGCTGTATAGTTTGTTACTATTTTTGTTACACATTTACTAGATGTATGTCCATGTGTTATTAACCAGAGTTTTAAATACCATAGGCTTAATAAATGGGTAGACAAATGAATGAGAAAGAGGCAGATTTCTCTTGTTTACAAGTTATGCATACCCAGGAGTGTATTTCAGCAGAGAGAGGCTTATCTACAACCTGTAATAAACAGTCCCAAACATATTTGGGAAatgcataaacacacataaaTGCAAGCAGATGCACACctgctcacacacatacacacacacatacacacacacttaaaaaaaaacagatttggATGGAAATTTTTATTGCAATCCATTTCAAATGTTCTTGTGCCAGTGCATCCATCTCTGGTTCTTCACATATCAAAGCTGTCAGTGTGTAAAGTTAGACCAGTTTTCCACACATTTGGAGAATGGTACTCAGTCATGACCAGATATCTGCTACAAAAAATGTATCTGAATGTTGCTTGTGTTCATACTTGGGCTTGTAAATGTTGTTTAGCTTTGTCCATTGCAAAAGTCTGTGTAATGTCCTGTAATGCATACTAATATATTATGTTGATCACAAATGAATATATTTAATGACACATGAAACCATGTGGCTTTTGTTTTTGCCTGTTTTTATTTTTGGTCACTCTTTGCTTTGGATAATAGACGGCTGTAATGAAAAAGTAAAAGACTGTAGCTATTGAACAGCCTAGTAAATCTGAAATAAAGCTCTGTAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344191 lncRNA upstream 22401 45200225 ~ 45201070 (+) True G1178658
TU1344188 lncRNA upstream 29229 45194005 ~ 45194242 (+) True G1178655
TU1344162 lncRNA upstream 55299 45167276 ~ 45168172 (+) True G1178631
TU1344160 lncRNA upstream 57048 45166050 ~ 45166423 (+) True G1178630
TU1344147 lncRNA upstream 75489 45146223 ~ 45147982 (+) True G1178617
TU1344735 lncRNA downstream 6988 45275408 ~ 45275638 (+) True G1179130
TU1344758 lncRNA downstream 32333 45300753 ~ 45343077 (+) True G1179151
TU1344785 lncRNA downstream 84038 45352458 ~ 45352905 (+) True G1179178
TU1344878 lncRNA downstream 149580 45418000 ~ 45426391 (+) True G1179259
TU1344825 lncRNA downstream 185539 45453959 ~ 45455862 (+) False G1179214
XM_021558210.2 mRNA upstream 68739 45152082 ~ 45154732 (+) True hmox1a
XR_002468078.2 mRNA upstream 82531 45135680 ~ 45140940 (+) True LOC110486534
XM_021559463.2 mRNA upstream 108324 45111643 ~ 45115147 (+) True zgc:162612
XM_021558201.2 mRNA upstream 194851 45026189 ~ 45028620 (+) False LOC110486529
XM_036941255.1 mRNA downstream 90319 45358739 ~ 45451742 (+) True usp43b
XM_021558235.2 mRNA downstream 216378 45484798 ~ 45524322 (+) False LOC110486545
XM_021558236.2 mRNA downstream 236498 45504918 ~ 45524322 (+) True LOC110486545
trnas-aga-61 mRNA downstream 258385 45526805 ~ 45526886 (+) True trnas-aga-61
XR_005035567.1 mRNA downstream 260978 45529398 ~ 45553552 (+) False LOC110485192
TU1343973 other upstream 253752 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 297154 44920363 ~ 44926317 (+) True LOC110485188
TU1343925 other upstream 359288 44859869 ~ 44864183 (+) True G1178425
TU1343861 other upstream 555012 44668068 ~ 44668459 (+) True G1178363
TU1343210 other upstream 1017901 44174384 ~ 44205570 (+) False LOC110486491
TU1344763 other downstream 43910 45312330 ~ 45313033 (+) True G1179156
TU1344997 other downstream 194168 45462588 ~ 45462943 (+) True G1179362
TU1345036 other downstream 261016 45529436 ~ 45530128 (+) True LOC110485192
TU1345697 other downstream 905608 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 906062 46174482 ~ 46176562 (+) True LOC118936304

Expression Profile