RNA id: XM_021558230.2


Basic Information

Item Value
RNA id XM_021558230.2
length 2935
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110486542
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45300733 ~ 45333032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caAAAGTGCATATTAGCTAACCCTTAACTATattcctaacctgctatgttaattctcatAACCTACGAAAAGTGAACtatgacaaaagctgtatccatCTAGTCAAAACCGAGTGGAAATATCAACCGGATGCTTcagatttatacatccggtgaaacatCTGGCTACTTGTTCTATCTGTGGCCATGTTGCACCAACGGGCTTACGGTGAAGTTATCTCAAAAATATGGTTTATACGGTTTCAAACAACACTGAGGTCGAGTTCGCAACAGGTTTGCGTCCGGCTTCTCCCCAGCCCTGGCTCTTTCTTCGACGAACCGGTGCACGTGAAGGTAGATGGACTTTCTCCCCACCAGAAAGTAGAGTTGAGGTCCAAACTCAAGGACGATAAAGGGGTCATTTTCAGAGCTTCCGCTCTGGTCGCTGCAGATGCTAGCGGACAGGTGGACCTgtgtcgctctccctctctgggcgGCAGCTACACGGGAGTTGAATCCATGGGCTTGTTTTGGGCCATGGCGGCCGAGACTCCACACAGCaaactgttaaaaaaaaatgttttgggttCAATGATGGTTGACATAGAAGTGCTGCATGGGGACACAGGTGAGCTCTTGGCCACAGAGACCAACGAGAGGCGGTTCATGACGGAAGGGGTAAGGAGAATACCGTTGGGCATGAAAGAAGGGAGAATTCGGGGAGTCCTCTTTCTACCACCCGGGCAGGGTCCATTCCCCGGTGTACTGGATGTGTATACTCTGGGTGGAGGTATATCAGAGGTCCGGGCCAGTCTGCTGGCTAACAAAGGCTTTGTGGTTCTGGCTCTGGCCTACTATGGCTTCCAGGACCTGCCCAGAACAGTGCCCAAATACTTTGACCTGGAGTACTTTGAAGAGGCTATCACTTTCCTGAGGCAACAGCCACAGGTACAGGGTCCAGGAATAGGAATCCTGTCCATCTCGAAGAGTGGGGATCTGGCTCTGTCCATGGCCTCTTTTCTCTCTGGCATCTCAGCCACAGCCTGGATCAACGGCAGCAACGCTAATACGGTGGTGCCACTGCACTACAAAGACCTCATCATCCCTTCCATCACGCCTATTGTTGAGAACGTCACCTTCTCCCCGTCCGGCATCCTTGACATCCGAGACGCCTTACCGGACCCAGAGACTGAGGTGAACCGCGGTTCCGTGATCCCAATAGAGCGTTCCAGTTCTAGGTTCCTCTTCGCCGCCTCTGAGGACGACAGGAACTGGAACAGCTGTCTCTTCGCCCAACAGGCCGCCGCCCGGCTGAGGCATCATGGGAAAGAGAACTTTGAGGTGGTGATGTACCCCAGGGCGGGGCATTTTCTGGAAGTACCCTACATGCCCCACTGCCCGTCTGGCTTCCATCCCGCGGTTGGTCAAGTGGTGGTGTTTGGGGGAGAGGCTAAAGCCCACCATCAGGCTCAGCTGGACCTGTGGAGGAGGGTCCAGGATTTCTTCAGGAAACACCTGAAGGGGAACAACACTGGCGAAAAAGCTACGTTAAATACTAGAGGATTACGCTCCACCATCCAGGCAAGCACACTCTCCTCTGCTTCTCCTTCCATGGCTCCTCCAAGAACAAGAATGAAGCAGATTTTGTGACCACAGTGTCAGCACAAATCCTGATGAATGAGCTCCCTGCTTGTTATGACTGACATGGGACTGTGGTCAAAGACAGAAGAAGATTGTTGCGGCTTTATGTCCCACCCGGGACGAAGAGGACTAGGTAGAGACACGTATGATTGGTCGTAATGTGTCAGGGACCTTCTCACAATGGTCTCACTGTGATTTTGTGAGTGTCAAGTTTAGTGCCCATTGACTCATGTCCTCTATTTATCCTGTCTTTATTTTAATAAAGACAGGTTTGATATTGTTGAGTCATATTGTTGGATGCAACAATGACAATTCAGCCCAGAAGATAAAACCTGAGGACAGTCAGAACACAGCAATTCCTGCAGATGGATGTGTAAAAAGACAGAAGAGGTGTAGGACAATAGGACACCATGTCGTCACTGAAATATCTAGATCAACAAAACATAGCCGGATCTTAAACTGATCCCCATAGAATTGAAAGTGAACAGACAAATCCGTCACACAGAACCCCTCAGTTTTAAGTCAGCCTAAACAGTGGTCTAAAAAGCACAGTGTGGGGTCTCTGTGTGCAGTGGTGACGTTACTCATGCTCGAGTAATCCAAGCTTTTTCCCCCTCTGATATCGTTGTTCAAGAACTATTTGAGGAACAGCGTGTTCATTGAAGATTAgccaggaaagagaggagacagggctCCCCCATTCTAAGACATTGTAGTTCCCCCTGCATGGGCAGCCGTGAGACATTCTCCTCTGTTTGACCCAGCTGATCTGGGCCTGTCCGGCAGCACTCCAGTGTGACCACAGGCTTTAGATGGGCCTGATTGGCTCAGCGGGTGGCTAATTGGATAAGCTTTTAATCTTCACACTATCTCCGCCCTGCTGGATCAGAGGCACAGGGAGGCAGAGATCAGTCCTTTGGTTTAATACTTAGTAAACATTTCAGGACTTAGTAAACATTATGGACAACAGAATCATGACTCACTAAAGATAACTAACAGGATGCATTCAGATGATAATGATTTAATCTGATTTGGGGACTGTGGATTATATGACCATTTTGACCTCATGTAAGCATATTTTTTAATCAGTATTTAGATTGGAATCAGACATAATTAAAATTAAATTAAGAGATTTAAACCAATCTGAAAGGACAATGTAGACAAGTGTTGAAGTCTCTGTTATTCTACTTGGATTGCCTCAATTTACATAAAGTCCACATACTGTGACATACAGTTGTTTTTTACCAAACCACAAATAAACTCTTTCTCATCTGGCTTCAATGGCCCTGCACTGCCTGTAGACTGTCATTCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344726 lncRNA downstream 30634 45269892 ~ 45270099 (-) True G1179121
TU1344724 lncRNA downstream 31349 45269044 ~ 45269384 (-) True G1179119
TU1344709 lncRNA downstream 32326 45267333 ~ 45268407 (-) True G1179106
TU1344679 lncRNA downstream 99133 45201372 ~ 45201600 (-) True pik3r6b
TU1344654 lncRNA downstream 118992 45181424 ~ 45181741 (-) True G1179056
TU1344818 lncRNA upstream 12184 45345215 ~ 45345426 (-) True G1179208
TU1344819 lncRNA upstream 19539 45352570 ~ 45352902 (-) True G1179209
TU1344978 lncRNA upstream 110206 45443237 ~ 45443576 (-) True G1179344
TU1344980 lncRNA upstream 111210 45444241 ~ 45445439 (-) True G1179346
TU1344940 lncRNA upstream 120928 45453959 ~ 45455854 (-) False G1179318
XM_021558220.2 mRNA downstream 87078 45200981 ~ 45213655 (-) False pik3r6b
XM_021558221.2 mRNA downstream 87078 45200981 ~ 45213655 (-) False pik3r6b
XM_021558222.2 mRNA downstream 87078 45200981 ~ 45213655 (-) False pik3r6b
XM_021558223.2 mRNA downstream 87078 45200981 ~ 45213655 (-) False pik3r6b
XM_021558224.2 mRNA downstream 87078 45200981 ~ 45213655 (-) False pik3r6b
XM_021558233.2 mRNA upstream 147969 45481000 ~ 45484678 (-) True mchr1b
trnas-aga-60 mRNA upstream 193558 45526589 ~ 45526670 (-) True trnas-aga-60
NM_001124180.1 mRNA upstream 318865 45651896 ~ 45653968 (-) False LOC100135782
XM_021556128.2 mRNA upstream 318874 45651905 ~ 45654777 (-) True LOC100135782
XM_021558242.2 mRNA upstream 321867 45654898 ~ 45677812 (-) False LOC110486550
TU1344653 other downstream 107428 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 213603 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 248709 45051576 ~ 45052024 (-) True G1178996
TU1344579 other downstream 272120 45026515 ~ 45028613 (-) True G1178982
TU1344529 other downstream 319533 44969210 ~ 44981200 (-) True G1178958
TU1345280 other upstream 196405 45529436 ~ 45530114 (-) True G1179619
TU1345282 other upstream 198827 45531858 ~ 45532662 (-) True G1179621
TU1346367 other upstream 1180426 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1550397 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1550397 46883428 ~ 46915018 (-) True LOC110486590

Expression Profile