RNA id: XM_021558233.2


Basic Information

Item Value
RNA id XM_021558233.2
length 3149
RNA type mRNA
GC content 0.44
exon number 2
gene id mchr1b
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45481000 ~ 45484678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCATCTCTGTCTGTCACATAACTTTGTTATGCCTGATGCAGCAATAGGCAATATAGATTAAAGTGTTGTTGTACTAtttaaaacacatttattttacatAGCTAGTTAGATGGTGAAAACATAGGAAAGTGCGTCACCTAGTGGCAAATGGTTTCCACTACGGTCTACACACAAAATAATAATGCTTACACCCTGGTGTCAAGGGACGAAAGGCAATGAAATTAATGATTGGAATACAAATAGCTACATTTCGAAGGATTGTCAATGTCCCCCTATCCTTGTGGCACTTTTTTTGTTCTTAGTTGTTGTCAATCCAACAAACAGTGCCATCACAAACGGGCATCAATATTGACAGTGGCACTGTGTTACTTGTGCACCTAGGCACTTACAAACTGGTATCACACATAGCCTATTATTGCTACGATGCAAAATCAGTTGTCACTACGTGTCTCTATGTACCcctcctctttttctctgccATATAAGGCAGGATGCGAAGCCACCATATGAAATGTTGGCAAGGCACATCACTGTAAACCTCACAGGCTCTCTTTCAAGAAGTATTCTTGTGTGAGGGAGTGCTTTGATTAGCAACACTACTGGTGTAAAGATAGAAGAAGACCAATTGGATTTTGAGGAGAGGCTACAGAAATAGAAGCAGTAAAAGGTCAGTGTGTACAAATTCACCCCGTCTCCACTGAATtactttgattgattgattaattgatgtACTAGAATAATTGGAGCCTGGTTCATCACCAATAATTACAATGCACAGCATAGACAAGGGCGCCCGTGCCTTTCTTTGGGTCTAAGATGTTTACAATTCGGGTTGTAAAGAATGTTGAGTAGTTACAAATGTTTCACCTTTATATTTTTGAGACTGTGATGAGGAGAAGGAATTTCCCGAATATATTTTGATGTCATTACAACAATTCTTGCTACTATGGAATAATACATTTCACTATTCGACAGCATCTATTTGAGCACGAAGTGGGTTTTATTGACAGTAGCCAAGCAGCACAACAATAGTATAGCCTACTGATGGCAGAATATTTATTTCTATAGTCTACTCTGATGGTAATTAGGCCTACGTTATTTGCCTGTTTTCACATCATTTTTCATTTAGAGCCCATCCATTTGTTGAGCTTAGTCTAACTTCGAAATGGACTTCGAAAATGTATCGAATGAGAACTGGTCTCAGACGTCTCTCCCATCATATAACTCACCCGAAAGTCCAGCAGAAAATGATGTGCCCTACCACAACGTCCTAATGCCCAGCATTTTCGGTGTCATCTGTTTCTTTGGGATTATTGGCAACTGCATTGTCATCTACACCATTGTGAAGAAGACCAAGTTCCGAGCCCAGCAGACAGTGCCGGACATCTTCATCTTCAGCTTGTCTTTAGtggacctcctcttcctcctgggcATGCCCTTCCTCATCCACCAGCTCCTGGGCAACGGTTCCTGGTGCTTTGGTGACATCATGTGCACGGTCATAACCGCCTTGGACTCCAACAGCCAGATAGTGAGCACCTACATCCTCACCGTCATGACTCTGGACCGCTACCTGGCCACGGTCCATCCCATCCGCTTCAACCATGTGCGCACACCCTGCATGGCGGGGGCTGCGGTGGGTCTGGTGTGGGTGCTCTCACTGGTCTCCATCACTCCCGTGTGGATGTATGCTGGCCTTATGCCCCGAGGGGACGGCTCAGTGGGCTGTGCCCTCCTGCTGCCCAATCCAGCCACTGACACCTACTGGTTTACCCTCTACCAGTTTGTGATGGCCTTCGCCCTGCCTCTGGTCATCATCTGCGTGGTGTTCTTCAAGATCCTTCAGAACATGTCTGCCACAGTGGCCCCCCTGCCCCAGCGCAGCTTGAGAGTACGTACACGTAAGGTGACCCGTATGGCtgtggctatatgcctggccttCTTCATCTGCTGGGCTCCGTACTACATCCTGCAGCTGGCCCACCTGGGGGTTCAGAGGCCCAGCTTTGCCTTCCTCTATGTCTACAACATTGCCATCAGCATGGGTTACGCTAACAGCTGCGTCAACCCATACCTCTACATTTTGCTGAGTGAGACCTTTAAGAGGCAGTTCATTGTGGCCATCCGGCCGAACAATCGGGTCTTCAGGTTGAACTCTGTCATGGCTGACGGTAGTGTGAGTCTGAGACTGGCCCCAGAGTGTAATCATCAGTCTCAGTCCTCCAGAGACCTACTAGTACACAACATGCTGCCTGTCACTGTGGCTGTGCACTGAGTCAGAAGCCCTAGCcgagccccatccctcagccctAGTTCCATGAATCTGGGCTCTCTCTCAGCTCAGTGGGAAGTGGTGCCCCCATCAGACAGTCATGCTCCCAATGTGTATGACAGGGTTAACGTGCAATGTATGTAGAAATGCTGAGTGTGTACAGTATCTATTTTGTACACAGCAGTACTGTGTTTATAAGACACTTTTCCCTACAGGGACATTCAACTTCATCCTATTAATCCTATCCTATCATGCTCTAATGAAGGAACTGTGAATACAGGGACTTTGTACTAGTATTCAGTAGGCAATTGAACTGTAGGCTATTAGTAACAATGTGAACTTTTATAAAAGGAAGTCAGCCCACAGTTATCAATAACACTATTTTGCAGTTCTGTTTCAAGTGGTAACAATTTGTATTTCGTTTTCTTTGATGATTTGACAGAATTCCACTTCAGTTCAATGTGTTAAAACAGGTTTATTTGTAGATATGTGATATTCTGTGATTCTGTCATCGGTCCGTCCAGTCAGTGATCTGAGATGCAGGGAAATCACACCTTGTCGTAATGTAATCTATGTCTATACTGGGACCTGTGTGATGACTGTGATCATTGAGAAAGTTGTGACATATTGATGTATTATTGTGGGCTATCTTCTAATGTGTTGTCCTTAGTCATTTTGTAATATTGAATATGTGCAGCCTGTCTATTACCATGTAATGTCCGTGATCACCAAGGAAACCTCTAGGTTGTTATCTTTGGGAAAATAATAATGTTCTGATGCACGATACAGTGTTGAATGACTGCAATTGATCCAAAGGGATTTCTagatgttacaataaagaattAAAGCATGAGACGTAAGAAAAACCCAATGC

Function

GO: NA

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344940 lncRNA downstream 25146 45453959 ~ 45455854 (-) False G1179318
TU1344941 lncRNA downstream 25146 45453959 ~ 45455854 (-) False G1179318
TU1344942 lncRNA downstream 25146 45453959 ~ 45455854 (-) True G1179318
TU1344980 lncRNA downstream 35561 45444241 ~ 45445439 (-) True G1179346
TU1344978 lncRNA downstream 37424 45443237 ~ 45443576 (-) True G1179344
TU1345288 lncRNA upstream 53590 45538268 ~ 45538793 (-) True G1179625
TU1345293 lncRNA upstream 63145 45547823 ~ 45548058 (-) True G1179630
TU1345292 lncRNA upstream 63847 45548525 ~ 45549374 (-) True G1179629
TU1345322 lncRNA upstream 122716 45607394 ~ 45627018 (-) True G1179658
TU1345353 lncRNA upstream 155212 45639890 ~ 45640411 (-) True G1179685
XM_021558231.2 mRNA downstream 147968 45307070 ~ 45333032 (-) True LOC110486542
XM_021558230.2 mRNA downstream 147969 45300733 ~ 45333031 (-) False LOC110486542
XM_021558223.2 mRNA downstream 267345 45200981 ~ 45213655 (-) False pik3r6b
trnas-aga-60 mRNA upstream 41911 45526589 ~ 45526670 (-) True trnas-aga-60
NM_001124180.1 mRNA upstream 167218 45651896 ~ 45653968 (-) False LOC100135782
XM_021556128.2 mRNA upstream 167227 45651905 ~ 45654777 (-) True LOC100135782
XM_021558242.2 mRNA upstream 170220 45654898 ~ 45677812 (-) False LOC110486550
XM_036941273.1 mRNA upstream 196180 45680858 ~ 45692754 (-) False LOC110486551
TU1344653 other downstream 287695 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 393870 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 428976 45051576 ~ 45052024 (-) True G1178996
TU1344579 other downstream 452387 45026515 ~ 45028613 (-) True G1178982
TU1344529 other downstream 499800 44969210 ~ 44981200 (-) True G1178958
TU1345280 other upstream 44758 45529436 ~ 45530114 (-) True G1179619
TU1345282 other upstream 47180 45531858 ~ 45532662 (-) True G1179621
TU1346367 other upstream 1028779 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1398750 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1398750 46883428 ~ 46915018 (-) True LOC110486590

Expression Profile