RNA id: trnas-aga-61


Basic Information

Item Value
RNA id trnas-aga-61
length 82
RNA type mRNA
GC content 0.56
exon number 1
gene id trnas-aga-61
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45526805 ~ 45526886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtcgtggccgagtggttaaggcgatggactagaaatccattgggatcttcccgcgcaggttcgaatcctgccgacaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345004 lncRNA upstream 55390 45471185 ~ 45471415 (+) True G1179369
TU1344995 lncRNA upstream 64500 45462053 ~ 45462305 (+) True G1179360
TU1344994 lncRNA upstream 65104 45461502 ~ 45461701 (+) True G1179359
TU1344987 lncRNA upstream 68990 45457607 ~ 45457815 (+) True G1179352
TU1344985 lncRNA upstream 70029 45456534 ~ 45456776 (+) True G1179350
TU1345041 lncRNA downstream 5832 45532718 ~ 45532950 (+) True G1179402
TU1345089 lncRNA downstream 126881 45653767 ~ 45654496 (+) True G1179446
TU1345088 lncRNA downstream 128141 45655027 ~ 45656039 (+) True G1179445
TU1345091 lncRNA downstream 135976 45662862 ~ 45663122 (+) True G1179448
TU1345095 lncRNA downstream 142674 45669560 ~ 45669987 (+) True G1179452
XM_021558235.2 mRNA upstream 2483 45484798 ~ 45524322 (+) False LOC110486545
XM_021558236.2 mRNA upstream 2483 45504918 ~ 45524322 (+) True LOC110486545
XM_036941255.1 mRNA upstream 75063 45358739 ~ 45451742 (+) True usp43b
XM_021558229.2 mRNA upstream 258385 45223469 ~ 45268420 (+) False LOC110486541
XM_021558228.2 mRNA upstream 258385 45223471 ~ 45268420 (+) False LOC110486541
XR_005035567.1 mRNA downstream 2512 45529398 ~ 45553552 (+) False LOC110485192
XM_036941256.1 mRNA downstream 2512 45529398 ~ 45554103 (+) False LOC110485192
XM_036941257.1 mRNA downstream 2512 45529398 ~ 45554103 (+) False LOC110485192
XM_036941258.1 mRNA downstream 2512 45529398 ~ 45554103 (+) False LOC110485192
XM_036941259.1 mRNA downstream 2512 45529398 ~ 45554103 (+) False LOC110485192
TU1344997 other upstream 63862 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 213772 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 557086 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 600488 44920363 ~ 44926317 (+) True LOC110485188
TU1343925 other upstream 662622 44859869 ~ 44864183 (+) True G1178425
TU1345036 other downstream 2550 45529436 ~ 45530128 (+) True LOC110485192
TU1345697 other downstream 647142 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 647596 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 712258 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 804832 46331718 ~ 46336278 (+) True LOC110485193