RNA id: XR_005035567.1



Basic Information


Item Value
RNA id XR_005035567.1
length 9816
RNA type mRNA
GC content 0.56
exon number 32
gene id LOC110485192
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45529398 ~ 45554103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGGGCCTTCGGTCTGTTTTCAGTAGTCGGAGAGGAAGAAAAATGGCGGCTGCGACCGATCAGAAGCTGGACGCCAGCCATTGGTTTTGAGCTTTCTCACGTAAACCGAGACCGGGGCTTTACGGGACTACCACTTTGGAATCTACGCAAATCAAGCTTTCTGACGGTACCCGTTTTTCTGGGTTCTGTGAAGGCTAAATAAACGCAGAAATTGAAATTGAAAATAATAGCTTTTATATATAATGAGGGGGAAAAGAGGCAGGCCGCCCAAAACCCTGCGGATGCAGGAGCCTTCATCAGAGCCGGAGCGTGGCTTGAGACCCAGGAGGGAGTTGAGGGCAAAGGGGAGAGGTAGTGCCGAGGTTGATTTTGAGAGTCCCAAGAGGGGAAATAACTCTTCATCGAGGGGCAGGAGGAAAGTGGGATCATCTCGCGGTAGGGGAAGAGGCAGAGGTGGTGGTGGCAGAGGTACTAGGGGCAGACGGTCAATAGCTAGATCTGTGGTTTATGATGATCATGAAAGTGATGAAGACGATGATGCTGTGAGTTTGAGATCTGAGGAGGACGAGTTGATAGAGGAAGAGACGATAACAGACGAGGAAGAAGAGGCCCTCAACGAGGAGTCAGACCCGCTTGAGGAAATACTCGAGGAGGATGATGATGCCAGCTACTGTACTGAAAGCAGCTTTCGGAGTCAGAGCACTCATGGCAGCACTCCGGGGCGGAAGAGGACGCGGGTGCACTGCCCTCGCTCGCCCATCTTTGAGGAAAAGGAGATCCCTCCTCTGGAGCTGCCCAGAACCTCTGAGGACCTCCTGGTGCCCAGCGAGGAACTGCTCAACGTGTCCTCCATCTATGAGGTCCTGCGCAACTTCAGCACGGTGCTGCGGCTCTCTCCCTTCCGCTTTGAGGACTTCTGTGCTGCGCTGGTAGGCCAGGAGCAGTGCACGCTGATGGCAGAGACCCACACAGCCCTGCTGAAGGCCATCCTGCGTGAGGAGGACACCTCCAACACCACGTTTGGTCCTGCTGACCTCAAGGACAGTGTCAACTCCACCCTCTACTTCATTGATGGCATGACGTGGCCCGAGGTGGTCCGTGCCTACTGCGAGAGCGACCAGGAGtaccaccatgtcctgctctaccAGGAGGTGGAGGACTACCCCTACGGCCCTCTGGACAGTAAGATCAAGGTGCTGCAGTTCTTGGTGGATCAGTTCCTCACCACCAACATCGCCCGTGAGGAGTTAATGTCAGAGGGGGTGGTGCAGTATGATGACCACTGCAGGGTGTGCCACAGATTGGGGGACCTGCTGTGCTGTGAGACCTGCTCTGCCGTCTACCACCTGGAGTGTGTGAAGCCGCCTCTGGTAGAGGTGCCGGAGGACGAATGGCAGTGTGAAATCTGCGTGGCACACAAGGTACCCGGGGTCACAGACTGTGTGACAGAGATGCAGAAGAGCAAACCCTACATCCGCCAGGAGCCCATCGGCTATGACCGCCACCGGAGGCAATACTGGTTCCTAAACCGAAGAATAATTGTTGAGGAAGACAGGGAGCATGATAAGAAGAAGATCTGGTACTACAGCACAAAGGTCCAGCTGGGAGAGCTGATAGAGTGTCTAGACAAGGAGTACTGGGAAAACGACCTGTGTGCCGTCCtcgaggagatgagagaggaggtgCACACTCACATGGACATCACAGAGGACCTCACCAACAAGGCCGCGGGCAACAACAAGGCCTTCCTCACGGCAGCCAACGaTGAGATCCTGGAGCGTGTGCAGGGCAGGCAGGAACGGCGAGCAGCGGAGCAGGCAGAGAAGACCACTACAGACACCACCAAGATAGAGGAAGAGACCCCCACACACTGCTCTCAACTACCAGACCATAGAGAGCTCCAAGACCCCGAGTATAAAGAGGAGGCAAGCTCACAAGCAGCTGTAGCTCCCCCTGCTGGAGAAGAGAACACCACCGTCCACCCCCCTAAGCCTGGCTCGTCCACCCAGGACGGCACTCTCCCTAAACATGAACCCCCTAAGCCTGCTGAGGTGTCCTGCTCTGCCGCCTCTGAAAGTGGGGAGGCCTCCATGGAGCCTGAGCAGGAGAGGCCAGatGATAAGCCTGAAGACTCAGAGTCCCATGGAGAGGAGGACCCCTCTGCCCAGTGCCAGCCTactcccccaccaccacaccctgtAGACGAGAACAGCAACAGCAGCCACCACGTCTCAGCGCCTGGGGTCCTCAGGAGGCCTGAAGAGCCAAACCTCGCTGACCGGTGCTCTCAGTCCTCCATCACCAGCCAGGACGACACGGGTGAAGGCAAGGAGAGTGGGAATGGTGAGGGGTCTGGACAGACTAACAATCGCATAGTGACTCGTCTGCGTAACCCGGACAGCAAGCTGAGCCAGCAAAAGACCCAGGGAGATGGCAGCCCTACACCCAGGGACAGCAAGGAGACATCTCCTGCCAGCTCTGAGAGTGAAGTGGCTCTTCTGGGTACTGTGAGGAAAGACTTGACGGTGAAGGACAACCTGAACAACTTCTTCAAGCTGGGCCAGGAGGGCAAGTTCCGAGTCTACCACAACCAGTTCAGCACCAACACACTGGGCCTCAACAAGCACCAGCATCGTGAGGACCACGACAAGCGCCGCCACCTCTCCCATAAGTTCAGCCTAACCCCCGCCGGGGATTTCAAGTGGAACGGCTCCATCCACGGATCCAAGGTGCTGACCATCTCCACCCTGCGGCTCACCATCATCCAGCTGGAGACCAATGTCCCCGCCCCCTTCCTGCACCCAAACTGGGCCTCGCACAGGACAAACTGGATTAAAGCGGTGCAGATGTGCAGTAAGGCTCGGGAGTTTGCCTTGGCGCTGGCCATCATGGAGTGTGCCATCAAACCAGTGGTCATGCTGCCTGTCTGGAAAGATGCGCTTGGACACACCAGGCTCCATCGCATGACCTCCATGGAgcgggaggagaaagagaaggggaaaaagagagagaaaaaactggAGGATGAAGAGACTATGCAGCAGGCCACCTGGGTGAAGTACACCATCCCCATCAAACACCAGgTGTGGAAGCAGAAGGGGGAGGAGTACAGAGTAACTGGGTACGGGGGCTGGAGCTGGGTCAGTAAGACTCACGTCCATCGCTTTGTTCCCAGGCTACCAGGGAACACCAACGTCAACTACCGCAAAGCACTCGAAGCAGCTAAAACTGGCAAAGAAAATGCAACATCCTGCCCGAACAAACGAAAATGTTTGCCCAAAGCACCAACGAGCTCGGAAACCCAGGCAAAAGGAGAGTCTACTCCAATTACTGAAGAAAAAGACCAGGAGGAAACCTCCACCATGGAGTCATCTGGGAGCACTTCACCAGGAGAGGGGCAGACTCTGAAAGAGAAGGAAGAAAAAAATATCACAGACGTGGAGGAGAAGAAAGATGATCAGGTGGAGGAGAAGACTGAGGACAAGATGGATGTTGACCCCAGTCCACCAGACACCTGTCTCAGTGAGGAAAAAGGTATAGTGGACAGCAAATGCCCCTCATTACTGACTGACCCTGCTGTGAAGGAGGAGCCCGGGGAGGAAGAAGAACCTAAGCAGGAGGACTCTGAGGCCAAGCCACCTGTCCGCCCCTTCAACTGGGATGTGGTGAACGTCAGCGAGGGCTTCCAGCTCCGTACGGCCTACAAGAAGAAGGTGAAGACGTCCAAGCTCGACGGGCTGCTGGAGCGCAGAGTGAAACAGTTCACCCTGGAGGAGAAGCAGAGGCTAGAGCGCCTCAAACAGCAGTCAGCCCTGGCCAAACACACAGTCTCCAAGGAGAAAGTTAACACAGGGACTCCCACCACCATCAAGGCTTCTACAGCAGACAAGTTAGCAGTGACACCGTGCACAAGTCTGAAAGCTGAGGGACAAGCAGACTCAGTAGTTAAAGACACAATTGTTAAAAGGCTTGACTTTGACCAGGAGCAGCCAGTGAAATTCCAGCCCTCAGGAGAGGCAGATAATCTGGACGTCAGATTAGGCTCCACCTGTAAACCCCAGGCAGCAGGAGCCACAGgccccaacctcaacaccacaGGGTTGGCCAACCATGAGAGCAGCGTTCAGGGCAATGGTGGGGATGCGTTATCTCAAACAGAGCTGAATGGAGGCTCCCAGAAAAGCATAGACGTCAACAACAAAGTCAATTTGACATCTGTAGAACCGGCTTTAGGTGCGGCCAAACCTCCCAGAGCAGAAGTGATGATAGCAGGAGAAAACGGTAGGAAGCATGGTTATGAGGAGACAGAGCAAGGTAATGgacagagggagatagaaagCATGGACGTAGACCAAAGCGAACCACATTTAGTGCAGGTGAACGGGAAAGACGCTGTTGACACCAAGACTCCTGTAGACTCAAAGATGCACTCAGACCTGGCCAAAGAAGTGGACACCAAGGTCATGCTCCAGATGTTAGAGGGTGAGATCAAAACACTGCCCGTGAAGGAACCTGTCAAATCCATTATGAACGGTACTCTCTCTCAGGACGGGTTAAAGGTCAACAACACTGTGTTAGCCACCAGCCTAGCCCTGGAGGACGTAGAGAGAAAGGCTCGGACACCACAACCTGACTACTCCGTCACGTCGTCAATGTTAGGGCCGCCCACTGGTGTTCCCACGGTAAGCAACAGCACCAAGTCTGAGCCAATGGAGATTGGGCAAACGGCATCCAATAAGATCACCCCGTTTCCTATCCCCACTGCAGAGGAGTCCAGCTTGAGTAACAACACCACAGTGAACAGCAGTAGCAGTACTGAGGTGCTGAAGACCATCACCCAAGttaccacaaccactactaccaccatgtcAACAGAGTCTCGCACGATGCAGATGGCCAAGGTCTCCAGCAGCACTAAGCCTGCAGTGACGCCTGCTGCAGAGAGCAGTGCTGTATCCACCCTCACCACCATGACCAAGACCACCGTCACCAGGGTCAGCTCCCCGACCCTCGGGGCCGCCGTCTCCGAGGAGACCAAGACTGTTGTCACTGCAATGTTGACAGATGCCAAATCTGGCCCCTCAGGCTCTTCAGTCACCTCTATGACGGTCAGTAAGGAGTACTCCACCAGAGACCGTGTCCGGCTGCTAAAGTTCTCCCGCTCCAAGAAGACCCGCTCTGGCACGGCCCTCCCCTCTTACCGCAAGTTTGTCACCAAGAGTAGCAAGAAGAGCATCTTTGTACTGCCTAATGATGACCTGAAGAAGCTGGCGAGGAGAGGGGGCATCAGAGAGGTACCTATCTTCAACTACAACGCCAAGCCAGCACTGGACATCTGGCCTTATCCCTCCCCCAGACCCACCTTTGGAATCACGTGGAGATACCGTCTCCAGACTGTGAAGTCTCTGGCGGGGGTCAGTCTGATGTTGCGGCTGCTCTGGGCCTGCCTGAGGTGGGATGACATGGCTGTCAAGCCCTCTCCTGCTGTAGGAACCACCCGCACAGAATCCTCGGAGACGGCGATCACCACAACAGAGATCATCAAGCGGCGAGATGTGGGGCCGCACGGCATCCGGTCTGAATACTGCATCAGGAAGATCATCTGCCCAATTGGCGTTACCGAAGCTCCCAAAGAAACTCCCACTCCCCAGAGGAAAGGCCTGCGCTCCAGCGCTCTGAGGCCAAAGAAGCCTGAACCGGCCAAGCAGACTGGACCCATCATCTTAGAGACGTGGGTGGCCGAGGAGGAACTGGAGATCTGGGAGATCAGAGCCTTTTCAGAAAGggtagagagagagaaggcccaGGCTGCAGACCAGGCTAAGGTTAGTAGAACGCTGAAGACAGCAGAGGAGGCCAAGGCCCAATTGGAGGCTCAGCTAAAGCACCAGAGATTGGCTGCTCAGCAGAAACGGTTGGAGCAACAGAAGCCTGGTGCCTCCACCCCCACCAGCACCCCTACAACCTCAGCTTCTGGCACTCCGGCATCCCTGACCAGCCAGGTCACCCCGGGGACTAAACTGGTCCTGGCCACCAAGCTGGGGACACCTGTCACATTCCAGCAGAACAAGAACTTCCATCAGTCATTTACTTCCTGGGTCAAGCAGGGCCAGGGTAGTCCAGCCTCCACTTGCTCACGGGCCACCGTGGCCAACAGCATGGTCACCACCTCTGGACAAACGTTCCAGATCTCTGCCAGCCCGGTGACCATGGCTGGCCAGGTCATCACCGCCAAGCTACCCATTCCGGCCAACAGCAAGATTGTTACGGTCAACATGCCAACCACACAAGGAGGTATGGTGCAAGTCCAGCAGAATGTCCTGGGCATTATTCCATCCAGTACCCCAGGCAACCAGCGGACCTACTCCTCATTCCAGAACCGCAGCGCCACCATCAACATCAGACCCAACACCTCCACCTCAACCACCACTCAGCCGGTAATTTCCACCGAAGCCCAGATCCGTCCGGGCATGACGGTGATCCGATCGCCCCTGCAGCAGGGCACCACCATGGGCAAAACCATCATCAGAACCCCCTTGATGATGCAACAAGGTATTCTACCAGCCAGCCAGCAGCAGGTGGTGACTCAGATCATCCGGGGCCAACCTGTCTCCACAGCAGTTTCCAGTGCCAGCCCTGTGCAGACCAGTGCAGGCCAGAGGATGCTGGGTGCCGCCCCGTCCCCCCGTCCTGTCACTCCTGCCACCGGGCAGTCCCCATCACCATCCACCCCCCAAGGCAGCCGACCACAGCAGGGCCAGGTCAAACTCACCCTGGCCCAGCTCACCCAGCTAACGCAGGGGGCACAGGGAGGGAACCAGGGTCTCACAGTAGTAatccagggacagggacagaccaCAGGCCAGCTGCAGGTCATCCCCCAGGGGGTGACAGTCATCCCAGGGCCTGGGCAGCAGCTCATGCAGGCTGCCATGCCCAACGGCCAGGTGCAGCGCTTCCTCTTCACCCCAGGGGTAACAGCCCCTGTCCCCAACCCCGCCACCACGGCCAGTGCTGCTGTCACCCCTGTCACAGCCACCACAACAACACCCTCAGGGCCAGcactgtctcagcctccagttcAGACTCCCGCCACCTCTCAAGCACCGGCACCACCAGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTACCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTAGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCCAGCCCCCTCAACAGGCTATCGCTCGTGTCGAGCCCCCTCAACAGGCTATCGCTCGTGTCGAGCCCCCTCAACAGACTATCGCTCCAGTCCAGCCCCCTCAACAGGCTATCGCTCCAGTCCAGCCTCCTCAACAGGCTACCACTCCAGTCCAGCCCCCTGCCCTCGTTCCTGCCCCCCCTCCAGTGTCCACATATCAGACTCAACCCCCTCAGGCTCAAGTCCACATTCCCCTCCAGTCCCCCACTGCCTTACCCATCCAGCAGATAGCCCAGATCCCAACCTCTCCACAACCGGTCCATATGAAGACTCTCTCGGTCTCCCCCTCCGTCACCCAGGCCACAGTGAGGCCCATCCAGGCCCATGCTCAACTCCAGCCCCAGGTTACGGCTCAGATCAGGCCCCAGCAGCAGCTGCAGCTCCACCACCAACCCCAGCTGATCACAGTGCCGGGGCTGCAGCAGCAAGTCCAGGTGCTGGGCACCATCCAGACCCACGTGGCGGCCCAGCTCCAGGCCCAGCAGGGTGGGGCGGTGCCCCAGCAGATCAAGCTGCAGCTGCCTATTCAGATCCAGCAGGCAGGAGGCCAGGTGCAGGCCCACCAGATTCAGAACGTGGTGACCATCCAGACAGCCAGCATGCAGGACCACCTGCAGAGGATCCAGCAGctcagagagcagcagcagaagaagaagcagcaggAGGCCAAAAGGGAGCAGAGCCTGCAGGCCTCCAGCGACATCATCCAGAAACAGGTGGTGATGaagcagaatgctgtgatagaaAATCTGAAACAGAGGAAGACCATGACTCCAGCAGAGCGGGAGGAGAACCAGAGAATAATCGTCTGCAACCAGGTGATGAAGTTCATTCTGGACAAGATCGACAAGGACGAGAAGCAGGCGGCtaagaagaggaagaaggaggagtCTGTGGAGCAGAAACGCAGCAAGCAGAATGCCACCAAGCTCTCGGCTCTGCTCTTCAAGCACAAAGAGCAGCTCAAGGCTGAGATCCTGAAGAAGAGGGCTCTACTGGACAAGGAGCTGCAGCTGGAGGTTCAGgagGAGCTGAGGAGGGACATCAGCAGGctgaggaaggagaaggagaaggcccAAGCTGCAGCCTCTCAGGCAGCCGCTGCCGCAGCCCAGGTagcctcatccctctcccccaccaTGGCCTCGCCCTCCTCCGCCCACAAACGCAAGAGGGACGACGAAAGGGACTCGTCCTCCGCCAAgcccaagaagaagaagatgatatCCACTACCTCAAAGGATCACAAGAAGGAAGTCAAGctgtactgtgtctgtaaaacGCCCTATGACGAGGCCAAGTTCTACATTGGGTGCGACCTGTGCTCCAACTGGTTCCACGGTGCGTGTGTGGGCATCACGGAGAAGGAGGCCAAGAAGATGGATGACTACGTCTGTAATGGCTGCAAGCAGGGCCAGGACTCACAGGACTCAGAGGGCACCACGGAGGAGCTGTACTGCATCTGCCGGACGCCATATGATGAAACACAGTTCTACATTGGCTGCGACCGTTGCCAGAACTGGTACCACGGGCGCTGTGTGGGCATTCTGCAGAGTGAGGCCACCCACATAGACGAGTACGTGTGCCCGCAGTGTCAATCCACGGAGGACGCCATGACCGTCCTCACACCGTTAACCGACAAGGACTACGAGGGTTTAAGAAGAATCCTGCGCTCCTTACAGGCTCACAAAATGGCGTGGCCGTTCCTTGAACCAGTAGATCCCAACGATGCTCCTGATTATTATGGCGTTATAAAGGAACCGATGGACCTTTCCACAATGGAAGACAGATTACAGAAACGGTATTACAACAAGCTCACTGAGTTTGTGGCGGACATGACCAAAGTCTTTGACAACTGCCGCTACTACAACCCCAACGACTCCCCCTTCTTTCAGTGTGCCGAAGTTCTGGAGTCATTCTTTGTACAGAAGCTCAAAGGTTTCAAAGCTAGCAGATTGTGATGTCATAAGTCTGACGTTATAGCTGGAGTCTGAGCTGGATGCTGGGGTCTCTAGTAGTGAATCATGGAACTTGCTGTTTCATAAACAGTGgaaattctgtGTCTCATAACAACAAACTACAGACTTCAACCTCTTAGTATATACCACATATGTGAACAACAAAAAATTGCACTCTGCGAGAATTGGGTTCAATTCTGAACAATTAATCCATGTTGGGACCTGGCTCCTGTGCTTTGtgacctccactcctctccctcctcctggccCCACTACGCAGCCCCCAAAGGAAGACTCTCCCTGTAAGACCAGCAGCGCTGCTCCCACAGAACTGTCAGGTGGAGCTGCTGCCTGCCCACCTCTGCCACATGGACATTTGACAAGGAGTTAAAATGGAGGGTTTGAATAAAGGCATTTCTGAAAAAGGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1345004 lncRNA upstream 57983 45471185 ~ 45471415 (+) True G1179369
TU1344995 lncRNA upstream 67093 45462053 ~ 45462305 (+) True G1179360
TU1344994 lncRNA upstream 67697 45461502 ~ 45461701 (+) True G1179359
TU1344987 lncRNA upstream 71583 45457607 ~ 45457815 (+) True G1179352
TU1344985 lncRNA upstream 72622 45456534 ~ 45456776 (+) True G1179350
TU1345089 lncRNA downstream 100215 45653767 ~ 45654496 (+) True G1179446
TU1345088 lncRNA downstream 101475 45655027 ~ 45656039 (+) True G1179445
TU1345091 lncRNA downstream 109310 45662862 ~ 45663122 (+) True G1179448
TU1345095 lncRNA downstream 116008 45669560 ~ 45669987 (+) True G1179452
TU1345096 lncRNA downstream 117111 45670663 ~ 45670951 (+) True G1179453
trnas-aga-61 mRNA upstream 2512 45526805 ~ 45526886 (+) True trnas-aga-61
XM_021558235.2 mRNA upstream 5076 45484798 ~ 45524322 (+) False LOC110486545
XM_021558236.2 mRNA upstream 5076 45504918 ~ 45524322 (+) True LOC110486545
XM_036941255.1 mRNA upstream 77656 45358739 ~ 45451742 (+) True usp43b
XM_021558229.2 mRNA upstream 260978 45223469 ~ 45268420 (+) False LOC110486541
XM_021558238.2 mRNA downstream 2266 45555818 ~ 45559601 (+) True LOC110486547
XM_021558237.2 mRNA downstream 6382 45559934 ~ 45614619 (+) True LOC110486546
XM_021558239.2 mRNA downstream 67981 45621533 ~ 45627020 (+) False LOC110486548
XM_021558240.2 mRNA downstream 67981 45621533 ~ 45627020 (+) True LOC110486548
XM_021558241.2 mRNA downstream 79104 45632656 ~ 45646849 (+) True LOC110486549
TU1344997 other upstream 66455 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 216365 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 559679 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 603081 44920363 ~ 44926317 (+) True LOC110485188
TU1343925 other upstream 665215 44859869 ~ 44864183 (+) True G1178425
TU1345697 other downstream 620476 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 620930 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 685592 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 778166 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1820611 47374163 ~ 47374477 (+) True G1181472

Expression Profile