RNA id: XM_021558240.2


Basic Information

Item Value
RNA id XM_021558240.2
length 2334
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110486548
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45621533 ~ 45627020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGCCGAATCTCCTTTTAGTTCGCCGGCATTTCAGCATCATCACGGCAGTTCGGGTTTGATATCGGATTTTCAGGCGTAGTTTATTTATCGTTTTTATTTATACACTTTGTTTACAAGATGCCTGGATTTTCCGACAGAGATCGTGGTAGAGATAGAGGTTATGGCAGTGGACCACCTCGTTTTGGAGGCGGcggaagaggaggtggtggtggtggggggaagTTCGGTAATCCCGGTGATAGACTGCGCAAGAAGCATTGGAACCTTGACGAACTCTCTAAATTTGAAAAGAACTTCTACCAAGAACACCCGGATGTTAATCGGAGATCTCCGCAAGAGGTTGCACAGTACAGAAGTACTAAAGCTGTTACTGTGAAGGGGAGGGACTGCCCTAATCCAATTATGAAGTTCCATGAAGCCAGTTTTCCAACATACGTGATGGATGTCATTAACAAAGCAGGCTGGTCAGAACCAACACCGATCCAAGCACAGGGTTGGCCACTGGCATTGAGTGGCAAGGACATGGTTGGCATTGCACAGACAGGCTCTGGGAAAACTCTCTCTTACTTGTTGCCTGCAATCGTGCACATTAACCACCAGCCTTTCCTGGAACGTGGAGATGGCCCTATTTGCTTAGTGCTTGCCCCTACCCGTGAGCTGGCTCAGCAGGTCCAGCAGGTGGCGGCAGAGTATGGCAGAGCTTCTCGCCTGAAGTCTGTCTGCGTTTATGGTGGTGCGCCCAAAGGGCCACAGCTCCGTGACCTGGATAGAGGTGTGGAGATTTGCATTGCCACACCTGGCAGGCTTATTGACTTCCTGGAGGCGGGAAAGACGAACATGCGCAGATGCACTTACCTGGTCCTGGATGAGGCTGACCGAATGCTCGACATGGGTTTCGAACCACAAATCCGAAAGATTGTGGACCAAATCAGACCTGACCGACAGACGCTGATGTGGAGTGCTACCTGGCCCAAAGAGGTGCGCCAGCTGGCAGAGGACTTCCTGAAGGACTACGTCCAGATCAATGTGGGAGCTCTGCAGCTGAGTGCCAACCACAACATCTTACAGATCGTGGATGTTTGCAATGATGGCGAGAAGGAAGACAAGCTCCTCCGCCTACTTGAGGAGATAATGAGTGAGAAGGAGAACAAGACCATCATCTTTACAGAGACCAAGAGGCGATGTGATGAGATCactaggaggatgaggagggatggTTGGCCAGCAATGGGCATCCATGGAGACAAGAGCCAGCAGGAGAGGGACTGGGTGCTCAATGAGTTCAAGTTTGGAAAGGCGCCAATTCTCATTGCCACAGACGTCGCCTCCAGGGGTCTAGATGTTGAAGATGTGAAATTTGTCATCAACTTTGACTACCCCAACAACTCTGAGGACTATATTCACCGCATCGGCAGAACTGCCCGGAGCCAAAAGACTGGCACAGCCTACACCTTCTTCACCCCCAACAACATGAGGCAGGCCAGCGACCTTGTTGCTGTGCTCCGTGAGGCCAACCAGGCCATCAACCCTAAACTCCTCCAGATGGCGGACAGAGGAGGTAAATCTAATTGGTCATTCAAGGGGAGGCAGAGGTGGTAGTGGATTTAGGGATGACCGCCGGGACAGGTACTCCTCCGGGGGCAGGCGTGACTTCAGTAGCTTTAGGGACAGGGAAAACGATAGAGGTTTTGACAGTGGACCAAAGAAGGTCTTTGGCACAAATTCACAGAGTGGAGGCTATGGGGCAAGTGGCTTTGACAAAAGCGGCAATGGTTTTAGCGGCTACGGCAGCAACGGCCAGTCAAACTATGGTACCAGCCAGGCCGGGGCGTTCCCAACGCAGAACTTCCAGGCCCCACAGTTTAGTGCCAACCAAGGAGGTGCACAGAATGGCATGAGCCATCAACAGTTCCCCTTCACGCAGCAACAAGCACCACAGCCCATGGTGCCTTACCCAATGCCCCCTCAATTCCCACAGTAAACATGCACATGAAAGTAAAGATGGTAACTTATTGCTTTTTTGTCTTGTTTAGTCCTATACTCTATCCCAAATTGTACTGTTTAATTTTTTACGCAGGGTtcaatggatttttttttaacctctatcaagtccggggggggggggggtcctgcagcGCAGCAATAGTGATGCCGCACAGTTTTGCTTTCTTTCACTTATTTAATTTGTTACATTCCTCAGTGATGTTTAGTCTTTTGTACTAGTTATTGCAGATGTATTGTTTTGTCCCACCTGTACCATTTAAAGTGATATGTTAAGATCTTAACTGGGAGGCACTGCATTGCCTTTCGATTAAAAACCAAAAATACTTCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345041 lncRNA upstream 88583 45532718 ~ 45532950 (+) True G1179402
TU1345004 lncRNA upstream 150118 45471185 ~ 45471415 (+) True G1179369
TU1344995 lncRNA upstream 159228 45462053 ~ 45462305 (+) True G1179360
TU1344994 lncRNA upstream 159832 45461502 ~ 45461701 (+) True G1179359
TU1344987 lncRNA upstream 163718 45457607 ~ 45457815 (+) True G1179352
TU1345089 lncRNA downstream 26747 45653767 ~ 45654496 (+) True G1179446
TU1345088 lncRNA downstream 28007 45655027 ~ 45656039 (+) True G1179445
TU1345091 lncRNA downstream 35842 45662862 ~ 45663122 (+) True G1179448
TU1345095 lncRNA downstream 42540 45669560 ~ 45669987 (+) True G1179452
TU1345096 lncRNA downstream 43643 45670663 ~ 45670951 (+) True G1179453
XM_021558237.2 mRNA upstream 6914 45559934 ~ 45614619 (+) True LOC110486546
XM_021558238.2 mRNA upstream 61932 45555818 ~ 45559601 (+) True LOC110486547
XM_036941263.1 mRNA upstream 67430 45529398 ~ 45554103 (+) False LOC110485192
XM_021558241.2 mRNA downstream 5636 45632656 ~ 45646849 (+) True LOC110486549
XR_002468081.2 mRNA downstream 51818 45678838 ~ 45681070 (+) False LOC110486552
XR_005035810.1 mRNA downstream 52510 45679530 ~ 45679601 (+) True LOC118938602
XR_005035809.1 mRNA downstream 53072 45680092 ~ 45680163 (+) True LOC118938601
XR_005035811.1 mRNA downstream 53304 45680324 ~ 45680396 (+) True LOC118938603
TU1345036 other upstream 91405 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 158590 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 308500 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 651814 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 695216 44920363 ~ 44926317 (+) True LOC110485188
TU1345697 other downstream 547008 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 547462 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 612124 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 704698 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1747143 47374163 ~ 47374477 (+) True G1181472

Expression Profile