RNA id: XM_021556128.2


Basic Information

Item Value
RNA id XM_021556128.2
length 2386
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC100135782
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45651896 ~ 45654777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAAATAATATCATTTGTTGGCCTATACTAAGGAGACCGGTATAGAGAACCTGGCTGGAGCAAGAGTTGACCACAATTTCTCCATGCCTACTATATCTCCCAAATATACAGGAGAATATCCACTTTGCCATGTGTCAGTCAAACTCAAGGGATGACGATAGAAGCTAATACGCCGAGTTGTGGAAACAATTTCTATAATCTGTCACGTGACATAGTAATAATCACTGGCTTTATAATGAAGAGGTGGACGTATTTCAGGGCacgcaagagagagaggagggaggagataaagagagggtgagataagACAATaaggcaggtagagagagtgttCGGATGAGATTGCATCAGGTAAGTAAAGCAACGTTATTTTCAGTTACAGTGCTCTTGTCGGTTACCATATAATTTCAGAGTATCTGCATATGAGTATCTGCACATGACGACAATCAAATATCGAGGAAAAAATATATTGTAAATGCATTACATTCAGTGTGTTAATTCTCTATTCTGTGTTACATTAATTATTTAGGCAATTAATAAACAGGTTGTCACAACACTGCCATTTGTGCGTAAAGCAGCTGACCTCAGGTCGCTTAATTTCTGGTTCTAGTTAATTGCTCTCCACTCTCCCTCGCTCCAAATTCTAATATTTCATTCATGAGCACCGACGTCGTACTATTCATATTCTAAATGGTAAAATGACTCACATCTACATGGACCACATCCTATAAATACGGATTATACTCCCTATTGGTCATCTGTGCACAGGCTGACCCAACAAGAGGAGGAAATTGAAGATTAACCTTCGTGTAACAGCCAAGAGAGAAGACTTGTGCAAACAAACAACAATAGAAGCAACAGAAGAATATCGAAGTAATCCAACTGGAGTTATAAAAGTTGTAAAATGTCTCTAGTGGGCGCCCTGCCTTTCCTGAAACCGCGCCTATCCCCTTCTGTTTCTCCTGGGCGCCAAAGAAGACACACACTGCCAGCAAGCGAGTTCCGGCCGCTCAACACTCAAGATGCTATCAGCGTGTTCGAAATCGAGAAAGAGGCCTTTATCTCTGTGTCAGGAGACTGCCCGCTCCACCTTGATGAGGTGCGTCATTTCCTCATGCTGTGTCCAGAGCTGTCCATGGGCTGGTTTGAGGAGGGGAGACTAGTAGCCTTCATCATTGGGTCCCAATGGGACCAGGACAGACTCACCCTAGACGCCCTAACTCTTCACAAGCCCAAAGGTTCCACAGTTCATATCCATGTGCTGGCGGTCCACCGGACATTCCGGCAGCAGGGCAAGGGCCCTATCCTGATGTGGCGCTACCTGCAGTACCTACGCTGCCTGCCCTATGTGCGCCGTGCAGTGCTCATGTGCGAGGACTTCCTGGTTCCCTTCTACCAGAAGTCTGGCTTCAAGGTGCAGGGCCGCTGTTCCATCACGGTGGCATCACTAACCTTCACAGAGATGCAGTACCCTGTGAGGGGCCATGCCCTGATGCGGCGCAACAGTGAAGCTATTGGTTTTTCTCAGACTGCGTTATTATTGGAGAAACAGACTCAGAGGCTTGAGTCTGTGTTATTATTGGAGGAACCGATTCAGAGGAGTGAGACTGCATTATTATTGGAGGAACAGACTCAGAGGACTGAGCCTGAGCCTGCTGATGTGTAAATCTTTTTTTACTGAGTAAGATATTAGATTCCTGCTGTACATATAAACTATGATGTAAAATAAAGTGATGTAAACATTTACATTTATATCTAAGATGGTAGTCTAAAGTGCACACCATACATGCATGACCAATGCAGGGAGTCTTTAAGCTTTATTACAATGTTTTAATTTAACGTTAGTTAATATGTGAATATTTCAACGTTAACTAGGTACATGCTAATGAATGTTAGAACAAATATTGTGTGACTTCTGTCTGTGTGAGATTATATTTTTACTGCAAATGTTCCCGTTTTATTTATTGTAAGTTTTGTCTGAAGGTTTGGGTTGCAAGCACCCTCCTCTCTGACGGTATATGGACTGACGTCACTGACTACCAGGCTTTAGCAGCTCAACCGTGCCTCTTTATCTCTATTAGTGGGCATTAGGTATACTGTAAACGTCTGAGGATTTACAAGAGGATCCTTTCATTGGACTGCCAGTAGATCTAGTGACTTAACAAGCCCGTTTTCATACGATGAGAAAAGTAGGCTACATCCACACCAATTTGGATTACTGTTTGTCTATTCATTTCCCTTTGGGTCACATGTGCAGAGCGTTAATCAAACCATGTAATATCTTCTCTTACTCCACCAGAACCTGTCTTACCCTTGAAACCAATCATATATTTAATAAATATGTTTTTGTACTGTTTTTgttattaaaaaatataataaagaTGA

Function

GO: NA

KEGG:

id description
K00669 AANAT; arylalkylamine N-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345353 lncRNA downstream 11494 45639890 ~ 45640411 (-) True G1179685
TU1345322 lncRNA downstream 24887 45607394 ~ 45627018 (-) True G1179658
TU1345292 lncRNA downstream 102531 45548525 ~ 45549374 (-) True G1179629
TU1345293 lncRNA downstream 103847 45547823 ~ 45548058 (-) True G1179630
TU1345288 lncRNA downstream 113112 45538268 ~ 45538793 (-) True G1179625
TU1345360 lncRNA upstream 1600 45656377 ~ 45656545 (-) True LOC110486550
TU1345362 lncRNA upstream 4255 45659032 ~ 45659235 (-) True G1179692
TU1345363 lncRNA upstream 4573 45659350 ~ 45661258 (-) True G1179693
TU1345365 lncRNA upstream 6543 45661320 ~ 45661620 (-) True G1179695
TU1345370 lncRNA upstream 14248 45669025 ~ 45669290 (-) True G1179700
trnas-aga-60 mRNA downstream 125235 45526589 ~ 45526670 (-) True trnas-aga-60
XM_021558233.2 mRNA downstream 167227 45481000 ~ 45484678 (-) True mchr1b
XM_021558231.2 mRNA downstream 318873 45307070 ~ 45333032 (-) True LOC110486542
XM_021558230.2 mRNA downstream 318874 45300733 ~ 45333031 (-) False LOC110486542
XM_036941254.1 mRNA downstream 438250 45200981 ~ 45213655 (-) False pik3r6b
XM_021558242.2 mRNA upstream 121 45654898 ~ 45677812 (-) False LOC110486550
XM_036941273.1 mRNA upstream 26081 45680858 ~ 45692754 (-) False LOC110486551
XM_036941274.1 mRNA upstream 26081 45680858 ~ 45692855 (-) False LOC110486551
XM_021558244.2 mRNA upstream 26081 45680858 ~ 45692892 (-) False LOC110486551
XM_036941269.1 mRNA upstream 26081 45680858 ~ 45692892 (-) False LOC110486551
TU1345282 other downstream 119243 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 121791 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 458600 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 564775 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 599881 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 858680 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1228651 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1228651 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1778019 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1807504 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile