RNA id: XR_005035811.1



Basic Information


Item Value
RNA id XR_005035811.1
length 73
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC118938603
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45680324 ~ 45680396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCAGAGATGAAAATGCTGCATAGGAAGTGCCGTCTGATGCGATAACTGACGCTGGATAAAGCTGCTCTGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1345096 lncRNA upstream 9373 45670663 ~ 45670951 (+) True G1179453
TU1345095 lncRNA upstream 10337 45669560 ~ 45669987 (+) True G1179452
TU1345091 lncRNA upstream 17202 45662862 ~ 45663122 (+) True G1179448
TU1345088 lncRNA upstream 24285 45655027 ~ 45656039 (+) True G1179445
TU1345089 lncRNA upstream 25828 45653767 ~ 45654496 (+) True G1179446
TU1345112 lncRNA downstream 10100 45690496 ~ 45690869 (+) True G1179465
TU1345558 lncRNA downstream 287674 45968070 ~ 45970177 (+) True G1179879
TU1345559 lncRNA downstream 293816 45974212 ~ 45975156 (+) True G1179880
TU1345638 lncRNA downstream 399889 46080285 ~ 46080840 (+) True G1179952
TU1345639 lncRNA downstream 400924 46081320 ~ 46085758 (+) True G1179953
XR_005035809.1 mRNA upstream 161 45680092 ~ 45680163 (+) True LOC118938601
XR_005035810.1 mRNA upstream 723 45679530 ~ 45679601 (+) True LOC118938602
XM_021558241.2 mRNA upstream 33475 45632656 ~ 45646849 (+) True LOC110486549
XM_021558239.2 mRNA upstream 53304 45621533 ~ 45627020 (+) False LOC110486548
XM_021558240.2 mRNA upstream 53304 45621533 ~ 45627020 (+) True LOC110486548
XM_036941275.1 mRNA downstream 50071 45730467 ~ 45739708 (+) False LOC110486555
XM_021558253.2 mRNA downstream 50071 45730467 ~ 45742507 (+) False LOC110486555
XM_021558255.2 mRNA downstream 50071 45730467 ~ 45742507 (+) False LOC110486555
XM_021558254.2 mRNA downstream 50073 45730469 ~ 45742507 (+) True LOC110486555
XM_036941277.1 mRNA downstream 132736 45813132 ~ 45881286 (+) False LOC110486558
TU1345036 other upstream 150196 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 217381 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 367291 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 710605 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 754007 44920363 ~ 44926317 (+) True LOC110485188
TU1345697 other downstream 493632 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 494086 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 558748 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 651322 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1693767 47374163 ~ 47374477 (+) True G1181472

Expression Profile