RNA id: XM_036941271.1


Basic Information

Item Value
RNA id XM_036941271.1
length 3853
RNA type mRNA
GC content 0.54
exon number 31
gene id LOC110486551
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45680858 ~ 45692892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACCTGGTGGGGACCAAACAGAATGTTTACCAATAATTCACTGGTAGACAGGGAGTGTACGTTGAAAATGCTACAACAGAGGAACCTGCGGGCTAAACAGAAGAAAGGACAGAAGAGTTCAATTGATGATATGTTAGGAGACCTGTTGGGAGATGATGATTTCCCAGTGAAGGCCAAAGCTCTGGCCCGTGAAGCAggcagactaggacctcctctaccATCACACAGTGGaaaacaCTCACTATTGGGCGACGACGACTTCTTCAGCAAACTGGCTGAGGAAGCTGAAAATGATGAGGGCTCTGATGTTTCTGAGGCTGATCCCACAGCCTTACTGGAGAGCATGAAGGACATAGATGATATGGACGCTGATCTCTTTGGATCAAAGAAAAAGCCCAGTTCAGCCCCAGCTCAGAGTAAAGGCTCTGGCATTGGAGGACCTACGAAAAATCCTCCTAAATCAGGAAACAAGTTAAAAGGAGGAATCTCAGATGAGCCAGACATTGAGGAGAAGAAGCCAAGTTCTGCTCCTGCATCGACGGCACGTGGCTACAAGAGGTTCAGCTTCACTAatgatgatgatgatgatgatgatgttcttGCCCCAACAACTAACACAAAAGACTTTGATGACCCTTTGGCTGACCTGTTAGATGATCTACCCATAGAAGACAAAAATGAGCCAAAAATCCCCAAAAAAGCTCCTCCAGAGAAATCAGTGCCGCCCCCAGACTCCCCTATCATAAAGAAAAAAGAAACAGCCTCACCAGCTCCAGTTCCAAAAAAGCGGGACGAGCTTACGTTTGATGATGACGAGGATGACCTAATGAATGCATTGGGGTTTGGGGAGAGTCCCAAAGAGAGCCCTAAGAAGAATGAGACCGTGCTCATACCAAAGAATGAGAGcagcagtgAGCTCCCTCAAAGAGCACGCACCAGGCTAGATGAGATTCTGGGGCGTGGGACTTCCCCTCGCCTTCTGGAGCGCCCTCcaacaggggagaggaaggaccCTCCGCAGCAGCAGGAAAAGCAGAAGCATCATCAGGAGACCCCCACTACTAAAGACCCCTTCCTAGAAGAAGACCTGACGTTCGGTTCCTATCAACCTACACTGGTCACTACACCGGAGGGACGACACTCACGCAGACAGTCGGTCAGATTCTCCACTGAGGACAACAGTGCCTCTTCTCCTGAGAAGAAACTCAAACCCATCACCCCCACCACGCTCACCCCTACCTTTCCCCGGCCTGCTGCAGACTGGCTGGGGCTCTCGCAGGATGATGAGGAAGAGCCCCCGCCTGTACCAGAACCCTTGAAGACCCCCTCCTCTTCGTCAGTGGGAAGCAAACCCTCCTCTTCTGGCAACCACATTCCACAGCCATCGACAGAGACTCCAAACACCTCCTTCAAATACTCCAAACCAGTAGGACCCAGTGTAGAGGTCTCTGCAAGCCAAAAGCACGAAGATGATTGGCTATCAGGGGCATTGAGCAGGAAGAAGACTCAATCATCCACACGGTCAGAGGAAAAGAGGACAACCCAGGAAGACTTTCTGGGGTTTGGAGACGAGGTGGATCTGGAGTCGTTTCTCAGCAAACGTGGTTCTTCACCAGCTTCCAGGAGGAAAGATGCATCCACCCCCAACAAGGAACCAGGAGATTCTCCTCTGCCCAGGGAGCCCTCCCACAGGCAGCCCAGCCCTACTGCTCATTCTACCCCAGTGAGAGAGGACCAGTTCAGGCCTGCTGTGTCTGCTAGAGTAGGCTTCTATCCTGACCAGACCCCAGACCCCTCTCCCCTGCCAACCTCTGCTACCATTAGCTTCCCCCTGCCCCAACAGTACCATCCACCAGCCCTGCAGGATCAGAGGGAGCCAGGATGGCCAAGTCAAGCAGAGCTGCCCCCTAACTACCCTGCCCAGCCAAGGCAGTCTATGTCTGGCCCCATGCCCCATGCTATGATGCCTGGCTTTATGCAGTTGCCACAGCAAAGCCAGATGCAGAACACTGCACCTGTTGTCCAACCACAGGTGTCTCTTTCAGCCAACAGTTTGCAACAACTCTTGCTACAACAGCAGTTGGAGTCCCAGCTGCTGGGGTTAGGGGGAGCTGTGGATGTAGCTGGGCtgcagagacagaagagagacacTGAGAAGCAGAATGGACATCTAGCTTTACAGGCCCGCATCATCAAACTGGAGGGACAGGTGAGATCTCTACAGCAGGAGCTAGACCAGAACCAGATGTTGCTGGAGAGTGTTCAGCAGAGACACAAGCAGGACACTGAGCTcatggagaacacacacagGGCTCGTGTGAAGCTGCTTGACGATTCCGCGGCACAGCGAGAAGCACGGGCACGACAGGAATGCGAGGACCTAGCAGAGCGCCTAGCCACCGTCACACGTATAGCTGAACAGGAGCGTATGGAGCTGCAGGCAAAGCACCAGCGCAGACTGGCCCAAACCCAGCAGGACAGAGACCGAGAGGTGGAGCGACTCAGAGACCTACAGAGGAAGTCTATTTTGGAGATGAAGAAAGACCACGAGGATCAGGTCCAGAGACTGAAGAGATTGAAGGATGAGGAGATTGATGCTGTGACCAGTGCCACATCACAAACCAGGCTGGGGGACCTTTCATCTCGGGTGGAGAGCACCCATGAGAACACAGCCCAGGGGCTGGAGCAGGGGGCACGGCAGAGAGACGAACAGCTCCGAGTGATGCAGgaccgtctgggccagcagcagaGGGCCATGGCAGAGGAGAGAACAAGGCTCAAAGAAGTCATCGCCAAGATGGACACCCAGCTGGCTGAGCAGCAGAGGCAACTAGAGAAGGAGCGCTGGAGAGTGAATGCAGAGCAGGCTAAGGCCGACTCATCTCAGAGAGGCCTAGACGAGGAGAGACGCTCTCTAACTCAGCACAtcagcatggagagagaggagctggagagGGCAAAAAGTGCCCTGTTGGAGGAGCAGCAGCAGGTAATGCAGCGCTGtgcagaggagagaaggaagctgGCGGCTGAGTGGACCCAGTTCCACACCCAGGAGAAGCAGAGGCAGGACCGAGCAGAGCGGGAGGCCAGCCGGGCGCTGGAGAGGGATGCCCACAGAGAGGGCTCCATCATCAGCATGGCGCAGGAACAGGTGGACCTGAAGCTGCGTGCTGGGGAGCTAAAGCAGCATGAGGCAGCTGTAGCACGGGAGAGGGAGgctctggagagacagagggaggaactgGACAGGGAAAAGGAGAGGCTGAGTGGTACAGGCCTGCAGCTGAAGACACGTGCCCAGGAGGTAGAGGCCTTCAGCAAGCTGGCATCAGAAAAATATAATGAGGGGGAGAAGGCCCTACAGGAGTCGAGACAGGTGGAGACTGAGCACCAGACCAGGCTGAGGAGCATCCACTCCCAGATGGAGAGACTGAGACAGCAGGAACAGCACCTCCATCAGGAGAGAATGAAGATGACTGAGCAGCGTAGAGAAATGGAGGCACTCAAGCACAACCTTCCAATCACTCCTTTCCCTCAAGCTATATTCACAGACTTCAGACCAGTGTCGGCAGTACCTCAGATGGCCTCCACCAAGGCTGTTCGCCAGCCCCCACCCCTGGTCTCTAGTCCGGATTCAACAGAGCTCCAGGCCAGATTGGCCCTGCTCAGGCACACAGCAGAGAAGGATCGTGACTTTCTGCAGGATGAGCAGTTCTTCCTGGACACACTCAAGAAAGCACCTTACAATTCAGCCTTTCACACTGATTAACTGTGGGGCTCAAAGCCCTGTGACTTTCTGGTATTAAGTACACCATTAAAACTTGACATTCTCTAATGTTTGCATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345370 lncRNA downstream 11568 45669025 ~ 45669290 (-) True G1179700
TU1345365 lncRNA downstream 19238 45661320 ~ 45661620 (-) True G1179695
TU1345363 lncRNA downstream 19600 45659350 ~ 45661258 (-) True G1179693
TU1345362 lncRNA downstream 21623 45659032 ~ 45659235 (-) True G1179692
TU1345360 lncRNA downstream 24313 45656377 ~ 45656545 (-) True LOC110486550
TU1345324 lncRNA upstream 11113 45704005 ~ 45709208 (-) True LOC110486553
TU1345432 lncRNA upstream 109011 45801903 ~ 45802188 (-) True G1179761
TU1345452 lncRNA upstream 136400 45829292 ~ 45829928 (-) False G1179779
TU1345454 lncRNA upstream 136400 45829292 ~ 45829928 (-) True G1179779
TU1345508 lncRNA upstream 208158 45901050 ~ 45901314 (-) True G1179830
XM_021558242.2 mRNA downstream 3046 45654898 ~ 45677812 (-) False LOC110486550
XM_021556128.2 mRNA downstream 26081 45651905 ~ 45654777 (-) True LOC100135782
NM_001124180.1 mRNA downstream 26890 45651896 ~ 45653968 (-) False LOC100135782
trnas-aga-60 mRNA downstream 154188 45526589 ~ 45526670 (-) True trnas-aga-60
XM_021558233.2 mRNA downstream 196180 45481000 ~ 45484678 (-) True mchr1b
XR_002468084.2 mRNA upstream 11115 45704007 ~ 45709228 (-) False LOC110486553
XM_021558252.2 mRNA upstream 17257 45710149 ~ 45716653 (-) True LOC110486554
XM_021558256.2 mRNA upstream 52061 45744953 ~ 45747109 (-) True LOC110486556
XM_021558260.2 mRNA upstream 275172 45968064 ~ 45977403 (-) True LOC110486561
XM_021558275.2 mRNA upstream 508134 46201026 ~ 46211745 (-) True LOC110486567
TU1345282 other downstream 148196 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 150744 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 487553 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 593728 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 628834 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 820565 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1190536 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1190536 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1739904 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1769389 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile