RNA id: TU1345324


Basic Information

Item Value
RNA id TU1345324
length 1931
lncRNA type sense_over
GC content 0.42
exon number 4
gene id LOC110486553
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45704005 ~ 45709228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGAATCATTCTACTCTCCCTCAATGGGAGGAATAGTCCCAGTGTTCTAACCCAGCTGCAGTCCCAAAACGGGATACATGTGATAGGACCATGTGCACCACTACGATGGTCCTCACCACTATTGCTGTCATCCTATACAGAAAGTTCTCAAACCGAGTCGAACCGCACAATGTTGATGATACCAATGAGGAGCCCTACATGAAGAGCAATGGAGTCGACCCTAAGAAATAATAACTCTCACAGCAGATGTAGCTCTAGTCTACAGTCTACATGGTAGATAAAAGTAAAATAACAAGTAGCCTACAGAACTGAATGCTGTCTGATATTTCAAGATGTGGAAAGGAAtgcaagaggaggaggggaggagagagggaggtaaaatGGAACATGTGGCAGAAGTAGAGATGCATGAAGTGAGAAGATGTATGCCCGTTCCACATTTAGCTTTCAAGTACTCACCACTACGCTGCTCCCACTAAATTATTTAGTGGCAGAACAACAATCTATCAACTCTGTGGAAGGTTATTATAAATGCATTACCTCCCCAAGCCTACCAGTTCAATGGAGTCGTGCAGGGCCTCATAAATATGGGTCAATAAAGGGACACACACAAAAGACTCAGGATGAATGAAATAGGCTTTATTGTTTTAGTGTGAACTTTCACCCTACCTGTGCGTAGAAGCTCTCAGATCTGAGGCGGGTCTTTTCAAATTAAGAGACACACGAACTGAAGACAGGTCTTCAACTTGATGGCTACACATCTGTCTAGTTTGACAGGCAAACATCCTATAACCTAAACCCCAAAAGGGGTATGTTacagacaacagcagcagctcCATCTCAGTCATCTGGAATTGATGCAGCTGGCGCCATTGCCTCTCCAGTGTTCAGAGACTGTGCATTGCCATGTGAAAAGCATCTGGAATTAATAACAGGCCAGGGCAAGCCAGCACAACaagaatattttttttatcacatCTTCAATCCCCCATCTGTCCTGCAGATCCCTCTAATGTTATTTCAGCATAGGATTGTCCCAGGaggcctccctcctccttcttgaGGCAGGAGAATTCAATTTCTGGGAATGAAACCTCAACCAATCACATCTTGGTGGAGCTGAATCTACAGAACAACATCTTGGTTTATTGtgggtttcttgttttgtagagtTGGATGTTTTATTAAGGCTTAAAGTAGGCCAATGATCAATGTAAAACTGTTGGAATGTGTTCCGTGCCTCAAAAAACAGTAGTTTTCTTTGATTGTCAAATAGGGCTGTACAGATTTGTGTCCATTGAGTAAATTATAATGGCTTTTAAAGAAGAGGCAGAACTTTAAAATGATGCACTTTAAATGGTAGGATGTTTTTGGTAATCTTTCACATTCCTAAAGTGACTTAAATATTGTTTTTGACTGAAACAAGGAGCTTTGGATAAGCAATATGTTTAAAATGAAATCGCTTGAACCCATAAATATTTGACCAAATGTCAGAGAACATAAATGTCTTGTAGTGAAGATGTGTGTGCCATGGCTACTAAATCTAAAGAGCAATGGAGAGAGGCCTCTGTTTTGTACCTCTATGTCAACCCTCTCCAGTCACAATGCATTGCTGCAAGTGAACCACCTCTTCCCCTACACCTTTAGCGTCCCGTTGGTCCCATTGAAGGAGCAACAGTCAGAAAGAGGTGTCTGCCTATGTTCAAAACACAGCTCCAACTTTACTTGACATTTTTAAAAGCAGCTAGGTGTCACCTTAGTAAACGTCTGCCTTGAGTCAGAgcttggtgatgatggtggttacTGGTAGGACGGTTTGTTACAGAATCGACTTTCCTTTGACATGACATCTTACAACTTGCTTCTTCTCTCTAAAGCAAACATTATGTATGTTCTTTGCTCTCCCCACCTGATCAAATAAAGAGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345370 lncRNA downstream 34715 45669025 ~ 45669290 (-) True G1179700
TU1345365 lncRNA downstream 42385 45661320 ~ 45661620 (-) True G1179695
TU1345363 lncRNA downstream 42747 45659350 ~ 45661258 (-) True G1179693
TU1345362 lncRNA downstream 44770 45659032 ~ 45659235 (-) True G1179692
TU1345360 lncRNA downstream 47460 45656377 ~ 45656545 (-) True LOC110486550
TU1345432 lncRNA upstream 92695 45801903 ~ 45802188 (-) True G1179761
TU1345452 lncRNA upstream 120084 45829292 ~ 45829928 (-) False G1179779
TU1345454 lncRNA upstream 120084 45829292 ~ 45829928 (-) True G1179779
TU1345508 lncRNA upstream 191842 45901050 ~ 45901314 (-) True G1179830
TU1345520 lncRNA upstream 197165 45906373 ~ 45906656 (-) True G1179842
XM_021558244.2 mRNA downstream 11113 45680858 ~ 45692892 (-) False LOC110486551
XM_036941269.1 mRNA downstream 11113 45680858 ~ 45692892 (-) False LOC110486551
XM_036941270.1 mRNA downstream 11113 45680858 ~ 45692892 (-) False LOC110486551
XM_036941271.1 mRNA downstream 11113 45680858 ~ 45692892 (-) False LOC110486551
XM_036941272.1 mRNA downstream 11113 45680858 ~ 45692892 (-) False LOC110486551
XM_021558252.2 mRNA upstream 941 45710149 ~ 45716653 (-) True LOC110486554
XM_021558256.2 mRNA upstream 35745 45744953 ~ 45747109 (-) True LOC110486556
XM_021558260.2 mRNA upstream 258856 45968064 ~ 45977403 (-) True LOC110486561
XM_021558275.2 mRNA upstream 491818 46201026 ~ 46211745 (-) True LOC110486567
XM_021558276.2 mRNA upstream 502970 46212178 ~ 46228933 (-) False recql5
TU1345282 other downstream 171343 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 173891 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 510700 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 616875 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 651981 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 804249 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1174220 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1174220 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1723588 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1753073 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile