RNA id: XM_036941275.1


Basic Information

Item Value
RNA id XM_036941275.1
length 1369
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110486555
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45730467 ~ 45742507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTTAGTTGTTGGTGTTGTTCATCTCttgcacagccagccagacagacagtcagacagacaacaacCTAAAGAGGTTTCACTCAACGAGCATAACTATTTTGGGAGATTATATTTATACTGGATTTAATAAGGTCTAAAAATAACAAAGTGCATTTTAACATCAACGTCGCACGTTTTTGTATCTTTCTTCGTATGACTACCTAACAGTTAGCTTAGCTTGCTAGCAAGCTGCAAGtgtggtaacgttagctagcggtTTACAcaggtgctagctagctaaccagctgcCAGAATGAATGTCGCAAAAAGTGGTTATCGGGTCTTCTCTGCCAATTCTACTGCAGCATGTACAGAACTAGCCAAGAAGATAACCGAAAGACTAGGAGTTGAATTGGGCAAGTCGGTGGTCTATCAAGAGTCTAATAGAGAGACCAGAGTAGACGTGAAGGAATCTGTTCGCGGCCAAACTATCTTCATCATCCAGACCATACCCAGAGATGTCAACACGGCCATCATGGAGCTGCTGGTCATGGCCTACGCCCTTAAGACCTCCTGTGCAAAGAACATAATTGGGGTCATTCCCTATTTCCCCTACAGCAAGCAGTGTAAGATGAGAAAAAGGGGTTCCATAGTGTGCAAGCTGCTGGCTTCCATGCTAGCCAAAGCAggTTTAACTCACATCATCACCATGGACTTACATCAGAAGGAGATTCAGGGCTTCTTCAGTTTTCCAGTGGACAACCTGCGTGCCTCCCCCTTCCTGCTTCAGTACATCCAGGAGGAGGTCCCAGATTACAGAAACGCCATTATTGTTGCAAAGTCACCGTCTGCTGCTAAGAGAGCTCAGTCCTATGCAGAGCGACTGCGTTTGGGCCTGGCAGTGATGCATGGCGAGGCTCAGTGTTCAGAGTCTGACATGGCTGACGGACGACACTCTCCCCCCTGTGTCCGTAACACCTCAGGACACCCTGGGCTGGAGTTGCCTTCTGGCAGCAAACAACAAGCTCCGTTCCCAGGCATAGAGCTCCCAATAATGATGGCCAAGGAGAAGCCCCCGATCACTGTTGTAGGAGATGTCGGTGGAAGAATCGCCATCATTGTTGATGACATCATCGACGACGTGGAGGACTTTGTGGCGGCAGCTGAGATTCTGAAGGAGAGAGGAGCTTATAAGATCTACATCATGGCTACACATGGGCTGCTGTCTGCCGATGCCCCCCGTCTTATTGAGGAGTCCGCCATCGACGAGGTgagatacagatgtaggatcttcatttcagacagtctgctacagcaggaaaataatcctgcagcagcaggaaatgtgaattattatgtggattgtaaTTAATAGatgtttttgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345112 lncRNA upstream 39598 45690496 ~ 45690869 (+) True G1179465
TU1345101 lncRNA upstream 49403 45678873 ~ 45681064 (+) False LOC110486552
TU1345102 lncRNA upstream 49403 45678873 ~ 45681064 (+) True LOC110486552
TU1345096 lncRNA upstream 59516 45670663 ~ 45670951 (+) True G1179453
TU1345095 lncRNA upstream 60480 45669560 ~ 45669987 (+) True G1179452
TU1345558 lncRNA downstream 228362 45968070 ~ 45970177 (+) True G1179879
TU1345559 lncRNA downstream 234504 45974212 ~ 45975156 (+) True G1179880
TU1345638 lncRNA downstream 340577 46080285 ~ 46080840 (+) True G1179952
TU1345639 lncRNA downstream 341612 46081320 ~ 46085758 (+) True G1179953
TU1345656 lncRNA downstream 377423 46117131 ~ 46117597 (+) True G1179970
XR_002468081.2 mRNA upstream 49397 45678838 ~ 45681070 (+) False LOC110486552
XR_005035811.1 mRNA upstream 50071 45680324 ~ 45680396 (+) True LOC118938603
XR_005035809.1 mRNA upstream 50304 45680092 ~ 45680163 (+) True LOC118938601
XR_005035810.1 mRNA upstream 50866 45679530 ~ 45679601 (+) True LOC118938602
XM_021558241.2 mRNA upstream 83618 45632656 ~ 45646849 (+) True LOC110486549
XM_036941277.1 mRNA downstream 73424 45813132 ~ 45881286 (+) False LOC110486558
XM_036941276.1 mRNA downstream 73426 45813134 ~ 45881286 (+) True LOC110486558
XM_021558258.2 mRNA downstream 172547 45912255 ~ 45931007 (+) False LOC110486560
XM_021558259.2 mRNA downstream 172547 45912255 ~ 45931007 (+) False LOC110486560
XM_036941278.1 mRNA downstream 172547 45912255 ~ 45931007 (+) True LOC110486560
TU1345036 other upstream 200339 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 267524 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 417434 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 760748 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 804150 44920363 ~ 44926317 (+) True LOC110485188
TU1345697 other downstream 434320 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 434774 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 499436 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 592010 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1634455 47374163 ~ 47374477 (+) True G1181472

Expression Profile