RNA id: XM_021558258.2


Basic Information

Item Value
RNA id XM_021558258.2
length 2653
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110486560
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45912255 ~ 45931007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAAGAGGCGGCGTTAGCTACGCCGGCCCCTTGCTTTGGATTCAACATCAAACCCGTCTCAGAAAGTCGCTTTATTTACGTATTTGTTGGAGTGTACCATGGATTTAATATAAGTAGATCGTCTACTGACAAACATCACGTGACTTATCTCCGAAAGTCATCGATCTGGGCAGAGCGCCAGAGGTTGAGCTACAGCCATGGTGCAACAATACCAGTCACCTGTAAGGGTCTACAAACACCCCTTTGAGCTGATAATGGCGgcctatgtGCGGAGGTTTCCAAACTGCCCCCTGATCCCCATCTTTGTGGACAGTGAGGTGGTGAAGGAGGAGCACAGTGATGACGGAGCCACTGTGTTCATTGAGAGGCGCTGTAAGGTGGAGGCAGACGCCCCCCGGCTGTTCAAAAGGATGGCTGGTGTGGACTACCTGTACTTCATCCATAAGAACACTCTGGACCGCAGGGAGAGGGCGCTGCACATCGAGGTCGTCAACGAGACCTTCTCCAACAGAGTCATCGTCCATGAGATCTGCAACTACACGGTTCACCCAGAGAATGAGGAGTGGACGTGTTTCGAGCAGACAGCCAGTCTGGACATCAAGTCCTTCTTTGGCTTTGAGAACGCGGCCGAGAAGCTAGCCATGAAGCAATATGCCAACAGTATTAAAAAGGGCAAAGAGATCATAGAGTATTACCTGAAGGAGTTGGAGGATGAGGGGGTGACCCACGTCCCCCGCTGGAGCCCCCCTCAGGCCCCCCCACCCACTGCCAGCCCCACAGATCTACCGGCTGGCTCCACAGATGACAAGTTGGATGCAGACTACATCAGGCGTTACCTAGGAGACCTGACGCCACTGCAGGAGAGCTGTCTTATAAGACTACGCCAGTGGCTGCAGGAGACCCACAAGGGCAAGaTCCCTAAGGACCAGCACGTGCTGCGTTTCCTGCGGGCCCGAGACTTTAACCTGGAGAAGGCCCGGGAGATCCTGTGTCAGTCGCTCTCCTGGAGGAAGCAGCACCAGGTGGACTTCCTGCTGGATTCCTGGGAGAGACCTCAGCTGCTACACGACTACTACACCGGGGGCTGGCACCACCACGACAGAGATGGACGCCCTCTGTACATTCTGCGACTCGGTCAAATGGATACCAAGGGTTTAGTACGCGCCTTGGGCGAGGAGTCCCTTCTGAGACAAGTCCTGTCCATCAACGAGGAAGGTCTGAGGCGTTGTGAAGAGAACACCAGAGTCTTTGGCCGACCCATCAGctgcTGGACGTGCCTGGTGGACCTGGAGGGGTTAAACATGCGTCACCTGTGGCGTCCAGGGGTTAAAGCCCTGCTGAGGATCATAGAGGTGGTGGAGGCCAACTACCCAGAGACCCTGGGATGTCTGCTCATACTGAGGGCTCCACGGGTCTTCCCTGTGCTCTGGACCCTGGTCAGTCCATTCATTGACGAGAACACCAGGAAGAAGTTCCTGGTGTATGCTGCGAATGACTACCAGGGGCCTGGAGGTCTGGTGGACTACATTGATAGAGAGGTCATCCCTGACTTCCTGGGAGGAGACTGCCTGTGTGAGATCCCTGAAGGAGGTATGGTCCCCAAATCTCTGTACAGGACAGCAGAGGCGCTGGAAAGTGAGGAGCTGCGGCTGTGGACAGACACCATCTACAAGACTGCCAGTGTCTTCAAGGGGGCCCCACATGAGCTGCTGATCGAAATCTCCGAGCCCTCTTCTGTGATCACCTGGGACTTTGACGTGTGTAAAGGGGATGTCATCTTCAACATCTACCACTCCAGGAGGGCGCCCCAGCCCCCCAAGAGGGACGTCCAAGGGGCCCATGGCAGCATCGTGTCGCCAGCCACCAACAACATGCAGCTGATTGACAGATCCTGGATTCTGGGGCAAGACTACAGTATGGTGGAGACAGCACTCACCtgcaaggagggagagagtgttcagggCTCCCATGTGACGCGGTGGCCCGGGTTCTACATCCTCCAATGGCGGTTCCACTGCTCCCCGGCCTGCTCTACCTCCAGCCTGCCCCGGGTGGACGACGTGCTGGCCTCCCTGCAGGTCTCCTCCCACAAGTGTAAGGTCATGTTCTACACCGAGGTGCTGGGCTCCGAAGACTTCAGgggCTCTATGACCAGTCTGGAATCCAGTCACAGTGGCTTCTCCCAGCTGAGTGCCGCCACCACCACCTCTAGCCAATCACAGTCCAGCTCCACCGTATCAAGAAAAACCAGTGCTGTACCAACCCCTGCCAATGAGGACTTAACCTTACCCAATGGGATGAGAGAAGTGTTATGAACTGTATGGAACAAGGATAGCCAATCCTTAATGCCATGTGGAGGAACACTGGACTTCCTACCTGTGACCACCTTCTAGTACTGCATTTAAAGCACTGGAATATATTATTAAAATATACATGTACATTTTTTTATCTGTATCTATAAATTTGTGACATTAAGATTGCTCTGGAAGTGGAACATCTGCTATGTGGGCATCTGCTGAATGAATAAATGCATATGAAGATGTCTTGCAAACCATCATCATCCTCTTCTTTCTTTCAATACCATTATTCTTTAAGGGAAGTGAAATGTTTCCCATTTTATTGAAACTGAACAATAAAGCACTGCCTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345112 lncRNA upstream 221386 45690496 ~ 45690869 (+) True G1179465
TU1345101 lncRNA upstream 231191 45678873 ~ 45681064 (+) False LOC110486552
TU1345102 lncRNA upstream 231191 45678873 ~ 45681064 (+) True LOC110486552
TU1345096 lncRNA upstream 241304 45670663 ~ 45670951 (+) True G1179453
TU1345095 lncRNA upstream 242268 45669560 ~ 45669987 (+) True G1179452
TU1345558 lncRNA downstream 37063 45968070 ~ 45970177 (+) True G1179879
TU1345559 lncRNA downstream 43205 45974212 ~ 45975156 (+) True G1179880
TU1345638 lncRNA downstream 149278 46080285 ~ 46080840 (+) True G1179952
TU1345639 lncRNA downstream 150313 46081320 ~ 46085758 (+) True G1179953
TU1345656 lncRNA downstream 186124 46117131 ~ 46117597 (+) True G1179970
XM_036941277.1 mRNA upstream 30969 45813132 ~ 45881286 (+) False LOC110486558
XM_036941276.1 mRNA upstream 30969 45813134 ~ 45881286 (+) True LOC110486558
XM_021558253.2 mRNA upstream 169748 45730467 ~ 45742507 (+) False LOC110486555
XM_021558255.2 mRNA upstream 169748 45730467 ~ 45742507 (+) False LOC110486555
XM_021558254.2 mRNA upstream 169748 45730469 ~ 45742507 (+) True LOC110486555
LOC110486562 mRNA downstream 199571 46130578 ~ 46138965 (+) False LOC110486562
XM_021558262.2 mRNA downstream 233987 46164994 ~ 46167292 (+) True LOC110486563
XM_036941279.1 mRNA downstream 242904 46173911 ~ 46176558 (+) False LOC118936304
XM_036941281.1 mRNA downstream 242925 46173932 ~ 46176558 (+) False LOC118936304
XM_036941280.1 mRNA downstream 243064 46174071 ~ 46176558 (+) False LOC118936304
TU1345036 other upstream 382127 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 449312 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 599222 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 942536 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 985938 44920363 ~ 44926317 (+) True LOC110485188
TU1345697 other downstream 243021 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 243475 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 308137 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 400711 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1443156 47374163 ~ 47374477 (+) True G1181472

Expression Profile