RNA id: LOC110486562


Basic Information

Item Value
RNA id LOC110486562
length 2729
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110486562
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46130578 ~ 46138965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTgccattacagggtattgtgtgtagatgaaaaacaatttaatcaacttTGAATTCACTTTACAATTTACTTTACATTTGGGAACTTGCATATCCTGAGGAAGCAGTGGTCATTTCCTGGTCAATGATACAAAAAGAAGGCAAATGATAAGACAAAggcgtaacacacacacttagacaatTATGCCCCGCCCTCTCCAACTTCCTGCTCCTTGCGTACTCCACCTCTCATTCCCTGTGGCCCGGCCCGTGTTTCCCTTCTTCCCCTGTCCCCATGTGAGCGCCTGCCACTCTGGCTCCTGGCTGTGGTGCTCTATCAGTGTCATCACTTAGGATGGACTCCCCACCACTCTACCTGCCTCTGCTGCTGACCAGTCTGCTCACCCTCTGGCAAGGGGCAGGAGCTCAGTTATTATTCACCATAGATAGTGTGACACTCAAACTGGACCCAAGTGGTGAGGTAACCAGTGGGACCTTTATGGACCTGAACTGTGAGGTCAGCGTCAGCCATCACCAGTCCCACCCCCTGACACACAGCTTCAACTTCCTGAGAGACGATGTCCTGGTCTACTCCAAAAATACCACCGAACCTGCGGTCCTTCACCAGCTCACCCCGGCCAGGGCTGCCAACTCTGGCACTTACAAGTGCCAGGTCATACATAGTTCAAGACAAGAGCAAAGGCAGCAGCACCCACAGACTCACCGTCACAGGCTTGCAGACGCCTGTGCTGCAGGTGACCTCCCAGATCCTGTTTGAGGGGGATGAGGTGGCAGCTACCTGCAGCGCCCCAGATGAGTATGGCTCCCTGCTCTTCCACTTCTACCGGGACCAGGAGAAGATCAAGCAGGTGAGGGCCAGTGGGAACTCAGTGGAGACCAGGCTGGAGCTGAAGCATTCTGGGGACACACACCTGTGCTGTTACTTTAAAATCACCATGCTGCCTGACGCTGGGAGGTCCAACAACAGTAACACTGTCAAGGTCATGGTCAAAGAACTTTTCATCACACCCATCATGAACATTCTTCCTGGTAAAGAcgctggtAAAGATGTGATTGAGGGTGACATTGTCGAGTTTGTCTGTCGAGTGGTGATCCCCCCACCCAATGTGACGGTCTTCCTGACCAAGGCCAAGAGGATGCTTAAGACAGCCTACATTAGTCTCAGTCATTCGCTCAGAGTGCTGGCTGAGGACTCTGGGGAGTATGTGTGCAAGGCGGACAGAGGCAATGTTCAGAAAGAAGCCTATGAGAGCATCAAAGTCAAAGAGTTGTTTTCCAAGCCAGTCCTGGTGATGAAGCCCAGAGAGGTGTTTGAGACAGAGCGCTTCACACTGAACTGTGATACTGACCGCTATTCCCATGAGAGAATCAACATTGGGGACGTGAAGTACTCCCTGTACAGGAACCAGGTCCTACTGACATCAGGAGGGAACTACAGTGCCACAGCACGCCCCTCCCTTAATGGAAATTACTCCTGCCAGGCCCAAGCCCAAGGAAGAGGCCAAACCAAAAAGATCTTCAAAAACAGCACACAGATTGTCCTCAAGGCAAAAGTGCCTGTGTCAGTCCCTCTTCTGAGCGTGGTAGGGGGCAGGTTGATCCTGGGCAAGCCCTTCCAGTTACAGTGTCAGAGTGACAATGGTAGTCTGCCCATCACCTACACCCTGCTGAGCCCCCACAGACAAGCTGAGTTCAGGGTGGTCCGCAGACCCTGGGATCTGGCCCTCTTCAACATCACCTCCATCCATAGGAGCATTGACATCCACAGCTTCTCCTGCAAGGCCGAGAACAACCCCAGTCAGCCCTACATGGAGAGCTCAGGAGAGCACCTCCGACGCACTGCCACCATCATAGAGCCAGTGTCCAGGCCAGTACTGACCGTGACACCCAAAATGAGGGACGTGGCTGAGGGGGAGGACCTGACCCTAACCTGCACTGTCCAGCGGGGCACACCCCCCATCACCTACACATGGTATCACACAAAGAGTGCCCTGCCCCTGGTGTCCAAGACCACCAATGACATGCGATTATCCCACTCGGTTCAAGGTGTCAGTAGAGAGCATGGAGGCGGATACTACTGCGTCACTAACAACCCATCCAATGACAGCCAGAGGAGTGCCATGGTCACTGTTGGAGTGAAGTTGGCTGGCTGGAAGAAGAGGCTGATCGCAGTCTTCTGCATCCTGCTCACAGTgtctctcatcatcatcatcctcgtTAAGAAATGCCTTCTTCCattcaggagagagagaacagtggagcTGTCAGTGAAGCCAGCAAGCACTAAAACAGACGAGACTCTGAGTCTGACCCATGGAGAAGTCAATGAGGCTGCCAATGTCACTCCTGGGGTCATGCGAAGGAGCGTCTGGAGTGATCACGTCTCAGGCTCAGGTGAGTGTACCAGAGTTCATGAGGTCAACTCCTACATTTCAACAGTAGGAACATTAACTATGTGACTATTCATGTCTAACATTAAGTGTGACTTAAAACCCCGGCCTGAACCAGAGCCAAAACCAGAACAAGGATCAGAGCAAGACGGACAACTTGAATGACCACCATCAATAATTTATTCAGCATATTGAACAACTGGAGCTGTTATTGATTTGAATGCATTTGtatattttctatattttttacaCCTCTTCTTCTTAACCTTTTGTACAGTCTTTAAATGCCTGTAATTATGCCTTTGTGAATTGAGAATAAAACAATGCAGCAGAATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345656 lncRNA upstream 12981 46117131 ~ 46117597 (+) True G1179970
TU1345639 lncRNA upstream 44820 46081320 ~ 46085758 (+) True G1179953
TU1345638 lncRNA upstream 49738 46080285 ~ 46080840 (+) True G1179952
TU1345559 lncRNA upstream 155422 45974212 ~ 45975156 (+) True G1179880
TU1345558 lncRNA upstream 160401 45968070 ~ 45970177 (+) True G1179879
TU1345704 lncRNA downstream 61535 46200500 ~ 46202304 (+) True G1180010
TU1345703 lncRNA downstream 81638 46220603 ~ 46226688 (+) True LOC110486572
TU1345701 lncRNA downstream 91420 46230385 ~ 46235061 (+) True G1180008
TU1345756 lncRNA downstream 128565 46267530 ~ 46267925 (+) True G1180058
TU1345768 lncRNA downstream 157815 46296780 ~ 46297068 (+) True G1180070
XM_021558258.2 mRNA upstream 199571 45912255 ~ 45931007 (+) False LOC110486560
XM_021558259.2 mRNA upstream 199571 45912255 ~ 45931007 (+) False LOC110486560
XM_036941278.1 mRNA upstream 199571 45912255 ~ 45931007 (+) True LOC110486560
XM_036941277.1 mRNA upstream 249292 45813132 ~ 45881286 (+) False LOC110486558
XM_036941276.1 mRNA upstream 249292 45813134 ~ 45881286 (+) True LOC110486558
XM_021558262.2 mRNA downstream 26029 46164994 ~ 46167292 (+) True LOC110486563
XM_036941279.1 mRNA downstream 34946 46173911 ~ 46176558 (+) False LOC118936304
XM_036941281.1 mRNA downstream 34967 46173932 ~ 46176558 (+) False LOC118936304
XM_036941280.1 mRNA downstream 35106 46174071 ~ 46176558 (+) False LOC118936304
XM_021558267.2 mRNA downstream 40947 46179912 ~ 46183380 (+) True LOC100136054
TU1345036 other upstream 600450 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 667635 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 817545 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 1160859 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 1204261 44920363 ~ 44926317 (+) True LOC110485188
TU1345697 other downstream 35063 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 35517 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 100179 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 192753 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1235198 47374163 ~ 47374477 (+) True G1181472

Expression Profile