RNA id: TU1345697


Basic Information

Item Value
RNA id TU1345697
length 1380
RNA type TUCP
GC content 0.42
exon number 5
gene id LOC118936304
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46173911 ~ 46176562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGAAAGGAAGCCGGATCTAAAGACAGCTATCCAACAGAGGATAAAGAAGGTTCAtactctctcaacccccccccaaaaaaaaatcatTAGAAAGGAGCAAGAGACAGACTACACACAGAATGAGCTCATCTGCTCCCAGGATGGTGAACAACTACAAGCGGACTTCCAGCCCTCGGTCTCCTACGAACAGTGGGGAGCTCTTCACTCCAGCGCATGAGGAGAATGTGCGTTTCATCCACGACACCTGGCAGTGTGTGCTCAGAGACATCCGGTCACCTCAGAGCAGCGAACGCAAAGACCGTGGACCACAGGAATATGTGGAAAAGAACCCAAATCCCAACTTAAATTCTTTCACACCAGTTGACCTGAGTGACCTcaagaaacacaacacacaggacTCCAAGAAGTCCTAGTCTTTCTCTTTATAGTCAACAGCTTTTTTTCTGCACCAATTATCCTTGAGaactttctcctcctctgtcagccAGCAAGTCAACCTTTTGGCCATTCCTGCCCAGAATTCCGGTCCTCTTTCTGCCCACCTGGACTAACAGCTTGCCCATTCAACAGCAGTGGGCTGATGTCCTAACAACCACAACATTTTTGGAGTTCCTTATCCaccccagtcccccccccccctctctctttctctgtccaggCTCAATATTTTCGTACCCTACCTCTCATCTGGTTGATGTGGAATGCAAGAAAGCTTGCATTTGATTTCCAGGGATTCTCTCTTCCGGTTCTTGGTTTTACAGCCATGAATTTTTCATTTTCActctttttttttatgtaaatggGACTGATGCAGAGTTTCAATGAAATATGCTGACATCCTGATGCCGAAGTACAGATGGTGTAAAAATTCTTCATGGGACACTTTAAAGGACTGCAGTCTTAAATATTAAGTTTTCTTTTCAATCTACAAAGGATAACGCTGAATGGCTGACATTCTTTTTTTGGAAGATAGTTGAATTGTAGATATATTGGAATGGAAACCGATTGTACGGGCGAGTTTTGGAAGCCAAAAATTATTTAGGATAAATGCCAACATTTTTCATATAAATTCATGCCCCTAAAATGGACTTCAAGTAGACATTGCCACATTGACTTCCCAGccttgaaaaaaaaaatggaataaaaTAATTTTACAGTATTTCACTCTCAATGCATTGGTCATAGATGTTCTGACCTAAATGTACTTTTTGGATGTGTTACCTATATACTCCCCAATGATGTATGTACAAACATCACAGAACCTACAGTAGGATGGTAAATGATTGTTGTCTCATGCTCTTTGTTTTGTTTGTGCATTGTTACTGAAAACAGTGTAATAggctactgaacaaaaatataattgcgacatgcaacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345668 lncRNA upstream 38504 46135107 ~ 46135524 (+) True LOC110486562
TU1345656 lncRNA upstream 56431 46117131 ~ 46117597 (+) True G1179970
TU1345639 lncRNA upstream 88270 46081320 ~ 46085758 (+) True G1179953
TU1345638 lncRNA upstream 93188 46080285 ~ 46080840 (+) True G1179952
TU1345559 lncRNA upstream 198872 45974212 ~ 45975156 (+) True G1179880
TU1345704 lncRNA downstream 23938 46200500 ~ 46202304 (+) True G1180010
TU1345703 lncRNA downstream 44041 46220603 ~ 46226688 (+) True LOC110486572
TU1345701 lncRNA downstream 53823 46230385 ~ 46235061 (+) True G1180008
TU1345756 lncRNA downstream 90968 46267530 ~ 46267925 (+) True G1180058
TU1345768 lncRNA downstream 120218 46296780 ~ 46297068 (+) True G1180070
XM_021558262.2 mRNA upstream 6736 46164994 ~ 46167292 (+) True LOC110486563
LOC110486562 mRNA upstream 35063 46130578 ~ 46138965 (+) False LOC110486562
XM_021558258.2 mRNA upstream 243021 45912255 ~ 45931007 (+) False LOC110486560
XM_021558259.2 mRNA upstream 243021 45912255 ~ 45931007 (+) False LOC110486560
XM_036941278.1 mRNA upstream 243021 45912255 ~ 45931007 (+) True LOC110486560
XM_021558267.2 mRNA downstream 3350 46179912 ~ 46183380 (+) True LOC100136054
XM_021558273.2 mRNA downstream 7844 46184406 ~ 46200116 (+) False LOC110486565
XM_036941282.1 mRNA downstream 7844 46184406 ~ 46200116 (+) False LOC110486565
XM_021558272.2 mRNA downstream 7848 46184410 ~ 46200116 (+) False LOC110486565
XM_021558274.2 mRNA downstream 7848 46184410 ~ 46200116 (+) True LOC110486565
TU1345036 other upstream 643900 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 711085 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 860995 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 1204309 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 1247711 44920363 ~ 44926317 (+) True LOC110485188
TU1345745 other downstream 62582 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 155156 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1197601 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 1291554 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 1291639 47468201 ~ 47470012 (+) True tmem100a

Expression Profile