RNA id: XM_036941282.1


Basic Information

Item Value
RNA id XM_036941282.1
length 2340
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110486565
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46184406 ~ 46200116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTTGTTGTTGAGCGCCCGCCTACATTCGGACAGCCTTTGTAGTGCGAGTCAATATTCCCGGAAGCGTGCTGTGCGTTTGATTTGAGCTGCTCCCTCCTCGCCATTCAGTGGCGCGTACTCCAGTGTCGCTGCAGCATTACGtagACTATGGCAGAGCAGGATCCCACCCCGGAGCAGCTGGCGGCCATCGCAGCGGCCAACGAGGAAGCGGAGGGCGGGGTCAACTACAAGCCCCCCGCTCAGAAGAGTCTGCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTGCGCAAGTACAAGGAGGCCCTGCTGGGGAACGCCGCCGCGGCTACAGTAGACCCCAACGCTCCCAATGTCCAGGTGACACGCTTGACCCTGATGTGTGACACGGCGCCGCTGCCCCTGACCCTTGACCTACAGGGAGATCTGGAGTCCTTTAAGAAACAGTCCTTTGTCCTGAAGGAAGGCGTGGAGTACAAGATAAAGATCAGCTTCAAGGTCAACAAGGAGATTGTGTCGGGACTGAAGTATGCCCAGCAGACCTACAGGAAAGGAGTCAAGGttgACAAGTCAGACTACATGGTGGGGAGCTACGGGCCACGGCCGGCAGAGTATGAGTTCCTGACCCCTCTGGAGGAGGCCCCTAAAGGCATGCTGGCCCGCGGCACCTACAACATCAAGTCCAAGTTCACTGATGACGATAAGCACGACCACCTCTCCTGGGAGTGGAACCTTAACATCAAGAAAGAGTGGAAAGACTGAGGCCCCGTCAACTTAATTCTTCCCCCTCTTCTTATTCCCCCTCCATTATTTTGCATTCATAATTATGTGATAAGTAATTAAGGCAAATTGCTCTCTCGTCCACCCCAATCCCTGCAGTAGTTTCATTCCAGTCACGTTGTCAtgccattcacccccccccccacacacacacacactccttgtgATGCTGAGTATTGAATATGTGGAGAAAGCAAATCATGTGCACAATCATGAATTTGTTTTGGTTAGTTTGtatataaccttttttttttatatgaaaaAAATGAAAGATTGATTTGTTAATGCTCTTGATATGGATGTCAATCAACTGTGTGAATTCCATCCTTTCCCCTTCATCCCCTCTTTACCCCCCTTCCTGCTGATTGTTTTATACAACCATGATCTGCCTTGTAAAGGTGTTGCTGTGGTAGGTCCACACTCTGTACTCTTTGTTGGGGACGTTGCTCTCTGTCAGTGGAAAGCCTTTGAGTAGATTATATGTACCAGAGTCCACACAATTAGTTTATTCTGGAACTAGTGTGAATTCCTAACCGTTAAGAGGTGCCATGAACAGCACTTACCGGCAGTCACCAGAGGCACTGTGACCACCTGCTGAAGGTGCAAGTGTGCCTCTTCCTGGTCAGGGTTTTCACCTCCCTACCTAGTTCATTCAGCAGCCATGTGGCCTTAAAGAGGATTCCTGTAGAACTAACGATGAAGGAAATGATCACAAAGAGCCATTTGCCTTTAGAACAGAACTGTCAGATTGTTACGAGAGCCTCCTACGGGGTTTGAGTAAAAGAGTTTTAGGCTGAGTGCAGGTGCGAACAGATGATCAGACAGACCATTGAGATGCTTGTACCTTCTTTCCAGAATTAGCCAGTAGAAGTAGACCATGAAAGAGAACAGCAGACATCTCTGCTCCCttccctcctcaccacatccagtGGTCTCAATGTGGACCACCTTTAGTGCTGTTTGCTGATGTGAATGTGTTTACGTTGATATAAAGAACCTGGTTTTGTTGACAACTAAGAAATGAGCTCCTTGTCAAATGCCCTCTAAGCAGACCTTGAGGCCTTCTTCCAGTCACTAACTCCATTACTCTAGCGTCTCATATGGGGCCTTGCTGGTGGCCCTTGTGAGCAGAGAGGAATGTCACACAAGGGTTGTTAATCTGCTCACCTCGAGTATGAATCAACTTTAGGATTACCAAAACTGGCTGTGCCTCTAGCCTTTACAACCACCAGCTGCTCTCTGCTAAGGTCAGACATTCAGAATGGGAACTCAACAAATAGTTTTGAACTTTGGGCCTGATGTTTTAGGTCAGGTCTAAGTTGTGCACAGACCCAGAGTTAAGTAGAACGAGAACAGCCAAGACCTCTTAATACAAAACCGTGTTATATTTTTCTACACTCCATTAATCAATGTCATAACTTGTGATGTAGGGCTCAGGCTGTTTGGTTTCAATGGTTCAGTATGCTTCACTGGATCATTATTCAGTATTGTTTTGATTCTGTGTGCCACCTGGAGAACACTGTTCACCTGTCACATTAAAGTCTTCAGACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345668 lncRNA upstream 48882 46135107 ~ 46135524 (+) True LOC110486562
TU1345656 lncRNA upstream 66809 46117131 ~ 46117597 (+) True G1179970
TU1345639 lncRNA upstream 98648 46081320 ~ 46085758 (+) True G1179953
TU1345638 lncRNA upstream 103566 46080285 ~ 46080840 (+) True G1179952
TU1345559 lncRNA upstream 209250 45974212 ~ 45975156 (+) True G1179880
TU1345704 lncRNA downstream 384 46200500 ~ 46202304 (+) True G1180010
TU1345703 lncRNA downstream 20487 46220603 ~ 46226688 (+) True LOC110486572
TU1345701 lncRNA downstream 30269 46230385 ~ 46235061 (+) True G1180008
TU1345756 lncRNA downstream 67414 46267530 ~ 46267925 (+) True G1180058
TU1345768 lncRNA downstream 96664 46296780 ~ 46297068 (+) True G1180070
XM_021558267.2 mRNA upstream 1026 46179912 ~ 46183380 (+) True LOC100136054
XM_036941279.1 mRNA upstream 7848 46173911 ~ 46176558 (+) False LOC118936304
XM_036941281.1 mRNA upstream 7848 46173932 ~ 46176558 (+) False LOC118936304
XM_036941280.1 mRNA upstream 7848 46174071 ~ 46176558 (+) False LOC118936304
XM_021558262.2 mRNA upstream 17114 46164994 ~ 46167292 (+) True LOC110486563
XR_002468089.2 mRNA downstream 19763 46219879 ~ 46225757 (+) False LOC110486572
XR_002468088.2 mRNA downstream 19767 46219883 ~ 46225757 (+) False LOC110486572
XM_021558280.2 mRNA downstream 28877 46228993 ~ 46230383 (+) False LOC110486571
XM_021558281.2 mRNA downstream 28877 46228993 ~ 46230383 (+) False LOC110486571
XM_021558283.2 mRNA downstream 28877 46228993 ~ 46230383 (+) True LOC110486571
TU1345697 other upstream 7844 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 7844 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 654278 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 721463 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 871373 45312330 ~ 45313033 (+) True G1179156
TU1345745 other downstream 39028 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 131602 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1174047 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 1268000 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 1268085 47468201 ~ 47470012 (+) True tmem100a

Expression Profile