RNA id: TU1345703


Basic Information

Item Value
RNA id TU1345703
length 2532
lncRNA type read_through
GC content 0.48
exon number 3
gene id LOC110486572
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46219879 ~ 46226688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAGGAGGCGAGGTCACCACCTCTGTCTCACTGCTGGCTCCAACTCACCCAGCAACACACAGGGAACTCACTCTCCACACTCACTCAGCAAAGTGATCACATCACACAACCTGCACCCAGATACTACAGAGTTGCACCCACCCTCAGTGTGAGGGACATTATGGATGCCAGGGAGGAGATGCTGACCCTGCTACAGAAGCTCTGGGCCAAACTGCAGGGTCTCCCCACCGCCAGCCCTCTGGAGATGGGGGCCTTCGCTGTCCTCGTCCTCTTTATCGTGGTCTTCCTGCTCATGCTGCTGATGACCTGTTTGACGTGCTGCTGCTGtcacagaaccagaaccaagggACCACATAGTCAGCTAACCTGAGACAATCCCCACTTCCCCCAATAATGAGGAGAGACATTATAAAACAGGCACTCTATGGAGTGCCACTGTATCACCAGGAGAGACATTCTGGAGAGGCACTCTATGGGCCTCTTAACCCCGGAGGAATGATGAGGACCCGTGGGGAGGGTGTGGAGCCCATCTATAAAGGAGCCCGGCCCTTGAACAACACACCtccatacaaaacacacacagagcctcCCTGAGAAGCAGCAAAAACAGGCCAGGCTTCCAGGCTTTCAGGAGTATCAACATTCCAAGGGGCATCCCTGGGCTCTGCTGGCTAACAAAGCAGTCTTTGACGTGAGAGATGGACAAGACTAGACCTCTAGGACGGCTTCAACTGATCCACACAACACAAAGACACAAGGAACACAGGAGCATggaatctcacacacacacacagtaatgcaAACAACTGGACATGTAGCTAAAAGATCCCAATAGAAGCACATGGGATTGCTTGGGGAGATGAATGTCTGTCAGTTCTAGGATGTATGGGTGTCAACTCAACCTCTGCCACTGGCTCAGAGACTCTAAGAGCCCTCTGCAGTTTCCAGCAACAACTCACTTAAATGGAGGCATCTTGCCAAACCCCTTAGAAGACATATGGCAACACTCTTACATCTAAAGGACTTCCTTTGCTTTATTGCCTTGTTCAAGTGCTAGATGGAACAAGGAAACTCAGAAATGtccgacttgctaactggttgaacgctgcacgtgtataactacaaccagttagcaagtcgaaAAAGTctgtttcctagttccgactagcacgtgaACACAGCATTAGTTCAGCAAAAACAAGCCATTATCTCATTCCTCAGGCGATTCAGAGGACCATGCCTGCCCTCTGCTGTACAAACATGGAACTGAGGCAGTGAGGAAGCCTTGTAATATGCTTCACAGTTatacacaaaaacagaaaaagaGTAATGCTGTCATTTCCGTATAGTTGTTGCATAGGTTAAAAAGGGCATCTCTTCCTTCTGAAAAGGCATTTTCTTAGGCTGCCTAAAATAGTGCAATACGCTTTTGTATCGCTTACATGAAATAAGACAAAATGCAGATGATTGTGGTGAGTTAtatcaggggttcccaaactgttGGCTGCtactgttccacacacacacacacacacacacacattgcaattTCAAAATGatgtagtgcatcatcagtttctcagtcattgcagaccttagagagccatttatAACTTGTccgaaatgtccagatcaaccaGCCTGTTGATttttgagtcactcaaatatcacatgacaAAAcatatagaattgcaagaaaatttgctttaaaactgcaaaagtTTCTCCACacaccatgacaaaatgtgtagatttgcagGAAATATTGTATGCTTTTAAACCTGCAAAATCTTCTCTCCTCCAAAAAAAAGgatgtgtcatgaacagtgcttgtggtCACAGAAATAGATGTGGCGCGCGAGCGCAGGGGGAGCGCgagatgttccccaatgctggaagagGGGGCCTGAGtgtaaaagtttgggaacccctgtgtTATATAACACTCACCCCTCTTGCTCACAGAATGACACCATGGCCTCGAAGTCTGTGATGGAAGCCTTGTCCTGATCTTTCTCGGAGCCACGCTTTGCCTGCAGAGAAGTCACACAATCATTCGCtcaaagttaaataaacaaacataaaacGATTTGAACACTCTACACACCAATTGCAATCCCCATGCATTTCCAGCACCATCATATTTCTATACTAATAACAAGCCTGTGAGGCAGGTTGACAGTGTAGTCTACACGTAACCTGTTTGCGGGCCACCTCCTTGCGGATGAGGAAGTTCAACTGCTCCCTGTCCTTGGGGGAGTAGTACGTCCTGCAGGAAGAGGGCAGCCCGTCTCGCCCCGCACGCCCAGATTCCTGGTAGTAACTGGCTAGTGACTTGGCAAGGTTCCAATGGGCCACAAACCTGACATTAGATTTGTCCACCCCCATGCCAAAGCTGATGGTGGCCACAATGACAAGCACCTTACCCTGCATCCAATCAGTCTGAGCCTCTGTGCGATCTCCTGCCTTCAACCCTACACAAGCAGGAGTTAAAGGTCAAGAGTCATGCCGCCCACTTTGTTATGTCTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345704 lncRNA upstream 18299 46200500 ~ 46202304 (+) True G1180010
TU1345668 lncRNA upstream 85079 46135107 ~ 46135524 (+) True LOC110486562
TU1345656 lncRNA upstream 103006 46117131 ~ 46117597 (+) True G1179970
TU1345639 lncRNA upstream 134845 46081320 ~ 46085758 (+) True G1179953
TU1345638 lncRNA upstream 139763 46080285 ~ 46080840 (+) True G1179952
TU1345701 lncRNA downstream 3697 46230385 ~ 46235061 (+) True G1180008
TU1345756 lncRNA downstream 40842 46267530 ~ 46267925 (+) True G1180058
TU1345768 lncRNA downstream 70092 46296780 ~ 46297068 (+) True G1180070
TU1345769 lncRNA downstream 71523 46298211 ~ 46298451 (+) True G1180071
TU1345794 lncRNA downstream 120872 46347560 ~ 46348851 (+) True G1180093
XM_021558273.2 mRNA upstream 20487 46184406 ~ 46200116 (+) False LOC110486565
XM_036941282.1 mRNA upstream 20487 46184406 ~ 46200116 (+) False LOC110486565
XM_021558272.2 mRNA upstream 20487 46184410 ~ 46200116 (+) False LOC110486565
XM_021558274.2 mRNA upstream 20487 46184410 ~ 46200116 (+) True LOC110486565
XM_021558267.2 mRNA upstream 37223 46179912 ~ 46183380 (+) True LOC100136054
XM_021558280.2 mRNA downstream 2305 46228993 ~ 46230383 (+) False LOC110486571
XM_021558281.2 mRNA downstream 2305 46228993 ~ 46230383 (+) False LOC110486571
XM_021558283.2 mRNA downstream 2305 46228993 ~ 46230383 (+) True LOC110486571
XM_036941287.1 mRNA downstream 30675 46257363 ~ 46272370 (+) False LOC110486573
XM_036941285.1 mRNA downstream 30676 46257364 ~ 46272370 (+) True LOC110486573
TU1345697 other upstream 44041 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 44041 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 690475 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 757660 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 907570 45312330 ~ 45313033 (+) True G1179156
TU1345745 other downstream 12456 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 105030 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1147475 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 1241428 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 1241513 47468201 ~ 47470012 (+) True tmem100a

Expression Profile