RNA id: XM_021558285.2


Basic Information

Item Value
RNA id XM_021558285.2
length 2064
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110486574
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46274324 ~ 46294468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCCCCTAGGTGGCTATAGTTCTTGCCAGGAGCATCAGTATCAAACCTGCAAATGCAAGGAATTTAGACAAGGAGGGGGCGGTGAGTGTAGAGAAGAGCGACAGCAAAGGAGAGAGCGGGGAAGGGAGATAAAGTTATTGCGGCGACGTGTCTAAAAGCTCtgcttattaaaaaaaataaagcttCTCAACTCGTGCCTTGACAAAAGGATTCTATAGGAACAAATAAAGAAGATGGATATCATTATGGAGAATATCCCTGAAATTGAATGTGTTGACCAGGGCGAGGGGCTTCACTCAGACAGTGCCTATGGGTCATCTGCGGTGGACACGGATACAGAGGACTGCCTGACTCCCCTCGAGATCACTTTACACTATAACGAGGACCTAATGCACAAGACCATCATGGTGGGAGACAGCGGTGTGGGGAAGACCTCTCTGCTGGTCCAGTATGACCAAGGCAAGTTCATACCCGGCTCCTTCTCTGCCACTGTGGGCATCGGCTTCACGAATAAAGTTGTGACGGTGGACAACGCGAAGGTCAAACTCCAGATCTGGGATACTGCAGGACAGGAGAGATTCCGCAGTGTCACGCACGCCTACTACAGAGACGCACAAGCCCTCCTCCTGCTCTATGACATCACCAGCAAGTCATCCTTTGACAACATCAGGGCCTGGCTGACTGAAATTCACGAGTATGCTCAGAAGGATGTGGTCATCATGTTGCTTGGCAACAAGACGGACATGGCCGGAGAGAGAGTCATCAAGcgtgaggagggagagaagctGGCCAAGgaATATGGAGTCCCTTTCATGGAGACCAGTGCCAAGACTGGAGTCAACGTAGAGCTGGCCTTCCTGGCTGTAGCAAAGGAGTTGAAGCACAGAGCTGCCCAGCAGCCCAACGAGCCCAAGTTCCAGATCCACGACTACATTGCGTCTGAGAAGCAGAAGTCTGGCTGCTGTGGTGGCTACATGTAGCTGAACCTCTCACCAACTGTTACACCACACCAGGCCACagtgagagaggagcgagagagatacaaacatctactgagggagataaagagagagagacatagagcagtagagagacagtcCCCCTAAAATAGCATCATCCGATAGCGAGTAGTCAAAAAGAGCAGAGCAACCACATTGTGAAAAAGAGAGCACCTGGTCTGCTCACCACCTACTTGGAAAGCCTATGGCAACTAGACAACCCTCATTCTGCCCCTATTAGGAGAAAAACCATGTCAGTATTTTCAGTTGGATAGAAATCCTTTAACAGTGTATTTAAAAAGTGAATTTATCTTTGAAACATGCTCAGATCATTTAGTTAATGTGTATCACATGCTGCAGCCTGTCAGCCTGTCAGCCGTACTCATTATTGCCATAAGGAAGGATTGGAAATCCAAATGGAATTTCTTGCCCCAATATTGCCATATTTACAAAGAAATGAAGAAATGATCTGATCACTTTATGTAAAGATGTTAGCTGGAATGAAATACAGATTTTTTGGGGCTCATGGCTTCATATGTTTCACCACATTCTATTCAGGACTAAATGccattatacatgttgtatgagGAGTACGAGGAGTACCCTCTACTACTGCGGTGTCATACACAGCCTGTCCCAGATGCGGCCTCTACCGGCTAAAAATATGTCTAATGACAGTCATTTTGTAATTATACTCCAAATTAAAAGTATTTTCTGAAATGTTGTGGTGAAATGTTAATTGAGGTGGTGGTCAGAAGTTCCAGCATGAGTTTTGATTTGCTTTTAAATGTGCCATCCACCATGTGCCATCCACCAATGAGAGAGCTCCCTCAGACACTGTAATGGATGTTATTGTTGTGTCTCTACTGTACATGGGTTGTTCATGGGTTGCATTGTGTAAAATGTTCCTTTGTATTTGGTTCATTATGAATGTTTGCTTATTGAATTTGCTTGATGTCACAATTATTGTCACTCTCTATGGAGGTGTCACAGTGATCACAAAGTGCCATGGAAAAGTGCTTTGTTATCGTACAGTATATAAAAACTATTTTTTGTAATGAAga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345756 lncRNA upstream 6399 46267530 ~ 46267925 (+) True G1180058
TU1345701 lncRNA upstream 39263 46230385 ~ 46235061 (+) True G1180008
TU1345703 lncRNA upstream 47636 46220603 ~ 46226688 (+) True LOC110486572
TU1345704 lncRNA upstream 72020 46200500 ~ 46202304 (+) True G1180010
TU1345668 lncRNA upstream 138800 46135107 ~ 46135524 (+) True LOC110486562
TU1345768 lncRNA downstream 2312 46296780 ~ 46297068 (+) True G1180070
TU1345769 lncRNA downstream 3743 46298211 ~ 46298451 (+) True G1180071
TU1345794 lncRNA downstream 53092 46347560 ~ 46348851 (+) True G1180093
TU1345837 lncRNA downstream 96011 46390479 ~ 46442094 (+) True G1180133
TU1345865 lncRNA downstream 132452 46426920 ~ 46431222 (+) True G1180161
XM_036941287.1 mRNA upstream 1954 46257363 ~ 46272370 (+) False LOC110486573
XM_036941285.1 mRNA upstream 1954 46257364 ~ 46272370 (+) True LOC110486573
XM_021558280.2 mRNA upstream 43941 46228993 ~ 46230383 (+) False LOC110486571
XM_021558281.2 mRNA upstream 43941 46228993 ~ 46230383 (+) False LOC110486571
XM_021558283.2 mRNA upstream 43941 46228993 ~ 46230383 (+) True LOC110486571
XM_036941296.1 mRNA downstream 8283 46302751 ~ 46336386 (+) False LOC110485193
XM_021558296.2 mRNA downstream 188668 46483136 ~ 46485100 (+) False mettl23
XM_036941299.1 mRNA downstream 188884 46483352 ~ 46485100 (+) True mettl23
XM_021558294.2 mRNA downstream 193632 46488100 ~ 46493732 (+) False LOC110486580
XM_036941298.1 mRNA downstream 194022 46488490 ~ 46493623 (+) True LOC110486580
TU1345745 other upstream 723 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 97762 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 97762 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 744196 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 811381 45462588 ~ 45462943 (+) True G1179362
TU1345717 other downstream 37250 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1079695 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 1173648 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 1173733 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 1254811 47549279 ~ 47549548 (+) True G1181636

Expression Profile