RNA id: XM_021558293.2


Basic Information

Item Value
RNA id XM_021558293.2
length 1933
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110486579
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46440996 ~ 46468343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCGACCGAAATTACGCTCAGCTTTATAGCCTGCGTTTACACCATCAGGTTTATACGATCGTGTTTAGTAGAAGCGCGGTGAGATGATCTACAGTGCGCGCGGGACTACACTCTGACCTACACACAAGCTGGCATCTGCAACAAGAAGGACACTTTTGCATGTACACATAAAAATACTATTTATTACATCTGCAGAAAACATAACAATTGTCAAGTGAACCTTAAATAATTCTACCGTCATGGAACTTGACGCGTCTATCATTCTCCCTGCGCTCTTCTTTACCATTCTTGCTGTTGTCTTGGCAGCCAAATTCATCCCCAAAAAACAaccagaggagaagaagaagaggattaAAGTAGGCAACAGAGACGACATTCCTCCTGCCAGAGCATTGATaccagcagtagcagtagtggaTGTACCAAAAGTGGAGATACCACCACAAGTGGTAGAAGCTGAAGTAATAACCGAACCAGTAACAGTTGCCCCTGAAGAGATCAATGTTGTAGAagaagagacagttaaagagccTGAAATGATCCCCGATGTTCAGGCTGTGCCAGAGCCCGTGCCAGAGCCCGTGGTTGAGCCAGAACCCGTGCCTGAGCCCATCCCAGAGCCAGAGCCCATCCCAGTCGATGTTGAGGAGCCCATCCTTGAGCTCATCGCCGAACTTGAACCTGTATCTGTGGTGAAGGAGGTCCCCGTCAGAGAGCCCACCCCTGAGCCAGCGAGGGAACCCACCCCTGAGCCCATCTTCATGCCAGAGCCAGAGGACCTTGAGAGCAATGAGGAGGTGCACTTTACCCCAGGAATGAAGATTAACAAGTTAGAGAAGATGATGAccaaggaggagatggaggaggagcagagCTGAGTAGGCGATGAAGAAAAGGAATGACTCTACACCCACACCTTTCTATTCTTTACTTTGTTTTGTGAAAAGTGATCACTGAAGAAGAACCTTTGAAACCTCTGCTGAGAAGAGCGATCTCTTCTGTTGATTGTCCGGCAACTTTGCTGTTGATATGGAAAATGTTTGTTGCTTTTTGTCCTCTCCccttttctttccttctttcttacTTTTAAAGGATGTGAATTAAAGGCTATTGCTCAACTCTGCCTGTGAATTGCATGCTGCATTACACCAAACACACAAGTGCCTATGTGAATCTTTAGTCCCCGCCCCCTTCGCTTTCTATCTGCTGTCTTACTGGTGGCGTCTATCCTTTTGACTAGAGCAGGAATGATTCATTCTGGATTCTGAGACTCTGATAGTCGCAACGGAACGTTTGAAGATAATACATCCATGCTTATTACAGAGTATGGGGTGTGGGGTGTGCAAAAAAAGTTCCAGAAAAAgtaaggttgggaaccactggtttagAAGAAATGGATGACCATTGCAATACCAATACAGTAAGGATGTGTTTAAATAGCTATTATGGGTGAAGGGGTAGGGAAGGGTTGTGTTGTTTTTCATTGTTTTCAAATATGAAACTGTGATTTAAAGCCAAGACAAGTGATTTGCATGCAAAGGCCCCCTCTACCCAAGTCTTGGTCTGTGTGGCCACTGTCCATTGTGAGCCAGTCCCAGACACTTTAAGTAATGTAACAAATGCCAATCAATAACATCTGAATAGCCTAATGATGGTATTCTGAATGCTGAGAAAACCATATATCTCactcctgtcctgactctgacGATCACTGGGGCTTTTGTCACTTTATATGTAACCAATGCacactgacaatgaatgggcttCTTTTCATATGGGACTGGAGCTCAGTAGTTAGAATGGCTAAAGTGGAATATGTGTATGACAACCCGTAGTGATTTTTGTAGGAAGATTGAAATGTTTTGTTTAAACATGACGTTTTTGGGCTTTTGTAAACTCTTGACTAGTAAAAGCCAGTTTGTCTAAAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346277 lncRNA downstream 106453 46331726 ~ 46334543 (-) True G1180499
TU1346284 lncRNA downstream 138294 46302481 ~ 46302702 (-) True G1180506
TU1346282 lncRNA downstream 142729 46298028 ~ 46298267 (-) True G1180504
TU1346266 lncRNA downstream 159194 46281578 ~ 46281802 (-) True G1180493
TU1346261 lncRNA downstream 168747 46269902 ~ 46272249 (-) True G1180488
TU1346393 lncRNA upstream 25841 46494180 ~ 46494722 (-) True G1180598
TU1346394 lncRNA upstream 29406 46497745 ~ 46497976 (-) True G1180599
TU1346396 lncRNA upstream 32222 46500561 ~ 46500790 (-) True G1180601
TU1346398 lncRNA upstream 35225 46503564 ~ 46504071 (-) False G1180602
TU1346403 lncRNA upstream 35225 46503564 ~ 46504071 (-) False G1180602
XM_021558288.2 mRNA downstream 12730 46422708 ~ 46428266 (-) True LOC110486578
XM_036941289.1 mRNA downstream 18615 46336544 ~ 46422381 (-) False LOC110486575
XM_021558295.2 mRNA upstream 4155 46472494 ~ 46482863 (-) True LOC110486581
XM_036941301.1 mRNA upstream 16432 46484771 ~ 46487881 (-) False LOC110486583
XR_005035574.1 mRNA upstream 16432 46484771 ~ 46487881 (-) False LOC110486583
XM_021558297.2 mRNA upstream 16432 46484771 ~ 46487882 (-) False LOC110486583
XR_005035570.1 mRNA upstream 16432 46484771 ~ 46487882 (-) False LOC110486583
TU1345282 other downstream 908334 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 910882 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1247691 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1353866 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 1388972 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 45118 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 415089 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 415089 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 964457 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 993942 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile