RNA id: XM_021558296.2


Basic Information

Item Value
RNA id XM_021558296.2
length 1453
RNA type mRNA
GC content 0.43
exon number 5
gene id mettl23
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46483136 ~ 46485100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCCGCCCACCCATTGAGCCGCAGGAAGCTCGTTGGTCACATATAAGAGCGAGCCATAAAACCGATTGGATAAAATGTAAAATACGCCTTCCCACCAGTGATTAGCACATGTCATTGGCTGTATACGTTCTACGTTTTCCCGTCCTCCAGCAGACAGTCGCAAGCgtgtctgtttttttttagaaGAGATGGGTTTTATGACAGTAAACGTAACGTTTTACCATTGAATTGATTTACTAACTCTCATTTTCACAATTGGGATGGTAAATGGAAAACAGAGCAACTGAGATGTCCAACATAGTGCAGAAATCGTTCACATTCGAAGAATACGAAGACCCGAAGCAATCACTGAATGTTTCCATCCCTGAGGTCCTTGACCCACAATATGGGATGCATGTATGGCCCTGTGCAGTGGTATTAGCACAATATGTGTGGACACATAGGGAAGAGCTGATGCACAAAACAGTGCTAGAGCTTGGGGCTGGCGTGAGTTTACCTGGTGTGGTGGCAGCAAAGTGTGGGGCACAAGTGATCTTGTCAGACAGTGCAGAACTTCCACTGTGTCTGGAGAACTGTAGGCGCACCTGTGAAGTGAATGAACTGCCCAATGTGCTTGTGGTGGGTATTACCTGGGGAGAAGTCTCCCCAGACCTTCTGCTCCTCCCTCCATTAGACATCATCTTGGGATCAGACGTTTTCTATGAGCCGCAAGatttTGAAAATGTCCTGGTGACCATCTCCTTCCTCTTGAGAAAAAACCCTGAGGCCCAATTTTGGACAACTTACCAAGAGAGAAGCGCCGACTGGTCCATAGAGGCACTGCTGCACAAATGGAACTTGAAGTGTCTCAACATTCCACTGGAGAAATTCCATGCCAACAAAGATCAACTAGCTGGGTCAACACTTCCTGGAAGCCATACTGTACAAATGATTATAACTGAGGACAAGGAAAGCTGAATGAAAGACAATTGTCAATTTATCCTTCAGTTACTACCAGCAAGGCACATTCAAAGTCAAGACACAATACAAGATCAATGGTTCAAAACTCAATGAATTATAAAATAGTTtaagttgtatagtagtgttctGTTAAAGTTTTAAAATAAAATGATAATCCAAATGTTTTTGAAGACAATTTTTATTAGCTTTCACATTGGACACCTATACAGACTCTTGCAAGGGGGAAAAGGAATGCACAAAGGGCAAGACAGAATGCATTAAACAAAATTAGCCCACCATACTTAGTGCTCTGAATAAGAGAACATTTTAAATTGTTGAAAGACAGGCATTCTACCGATGGTGAATTTGTAGCAGCCATTTAAGTTGGCCACCATCACAGCATTGTAGCCACAGGGGCATTCCGGAGAACACTGGAAACAGCCAAGCACTGCAACACGCCACCTTAACAGCTAACCAGCAATACTCAACTGCTACACAACTGCGCCTAgtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345907 lncRNA upstream 7057 46471918 ~ 46476079 (+) False G1180193
TU1345908 lncRNA upstream 7057 46471918 ~ 46476079 (+) False G1180193
TU1345900 lncRNA upstream 7057 46471970 ~ 46476079 (+) False G1180193
TU1345910 lncRNA upstream 7057 46471970 ~ 46476079 (+) False G1180193
TU1345913 lncRNA upstream 7057 46471970 ~ 46476079 (+) False G1180193
TU1345930 lncRNA downstream 12370 46497470 ~ 46497708 (+) True G1180200
TU1345945 lncRNA downstream 39098 46524198 ~ 46525268 (+) True G1180205
TU1345956 lncRNA downstream 53208 46538308 ~ 46538685 (+) True G1180210
TU1345957 lncRNA downstream 53679 46538779 ~ 46539131 (+) True G1180211
TU1345970 lncRNA downstream 74927 46560027 ~ 46565394 (+) False LOC110486588
XM_036941296.1 mRNA upstream 146750 46302751 ~ 46336386 (+) False LOC110485193
XM_021558285.2 mRNA upstream 188668 46274324 ~ 46294468 (+) False LOC110486574
XM_021558286.2 mRNA upstream 188668 46282652 ~ 46294468 (+) True LOC110486574
XM_036941287.1 mRNA upstream 210766 46257363 ~ 46272370 (+) False LOC110486573
XM_036941285.1 mRNA upstream 210766 46257364 ~ 46272370 (+) True LOC110486573
XM_021558294.2 mRNA downstream 3000 46488100 ~ 46493732 (+) False LOC110486580
XM_036941298.1 mRNA downstream 3390 46488490 ~ 46493623 (+) True LOC110486580
XM_021558298.2 mRNA downstream 8846 46493946 ~ 46509241 (+) True LOC110486584
XM_021558300.2 mRNA downstream 57092 46542192 ~ 46547913 (+) True foxj1a
XM_021558302.2 mRNA downstream 74708 46559808 ~ 46565672 (+) False LOC110486588
TU1345717 other upstream 146858 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 209535 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 306574 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 306574 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 953008 45529436 ~ 45530128 (+) True LOC110485192
TU1347316 other downstream 889063 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 983016 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 983101 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 1064179 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 1257261 47742361 ~ 47743064 (+) True G1181955

Expression Profile