RNA id: XR_005035573.1


Basic Information

Item Value
RNA id XR_005035573.1
length 1859
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110486583
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46484771 ~ 46487882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTTACTCTTCAACCTCATTCAACGAGGAGGAGCAAGGGATAACATCTCGTTCTAACAAATGGTCGGTGCTAAGGAAATTGTTATGAATTTGGAAAGCTATATTGCATTTTTTTAAGAAAAACTCGACATATTGCGAGCAGACTGATTAAGTACGATAATTTTAATCAAACATTTTAAGCGGGTGTTGACCTTTCACCCACATTTTCTGGTAGTATCGTTGCGTGTTTGTTAGTTAGGCTAACTGAGGCCCTATCTGCAACATGAGCTATGGTAGGCCCCCGCCCGATGTTGAGGGCATGACTTCTCTTAAAGTGGATAATCTGACGTACCGAACCTCACCTGAGACCCTTCGCCGTGTCTTTGAAAAGTATGGTAGGGTAGGAGATGTTTACATCCCCCGAGATCGTTATACGAAAGAAAGCAGAGGGTTCTCCTTTGTGCGATTCCATGACAAGCGGGACGCAGAGGATGCGATGGACGCAATGGATGGTGCCGTGCTGGACGGACGCGAGCTAAGAGTCCAGATGGCCCGTTACGGACGTCCCCCAGATTCTCATCATGGAGGCGGTGGTGACCGTGGAGATCGTGGTGACCGACGGCGTGGAGGTGCACCCCGGAGTCCGAGGCGTCGGAGACGCAGCAGATCCCGGAGCAGAAGCCGATCTCGTTCCCGCAGCCGCTCCCGCAACAGCCGATCAAGGTCTCGTTCATACTCTCGCTCCAAATCTCGCTCCCCCAAGAGAGACAAGGCCAAGTCCCCGTCCAGGTCCCGCTCCAGATCCAAGTCTCCCAAGTCAAAGTCCCGTTCCAGGAGCCACACCCCTGCGGAAAGAGCCTCGAGATCAAGATCCAAGAGCCAGCCCAAGTCACCTGGGGAGAATGGAGCTGAAACCCCATAGATGACTGACAAAATGCTGCGGAATCCTGTTTTCAAAAGAGGAGTTTGAGGCAGTATGAGCAGTTAGTGAGCTGGGTGTGTGAGCTGTCCGGGCACCTGCTGCTGTGGGGGTTGCTATGGAGCAGGCCGGTTGCAGTcagtgttggggtggtgttgaGATGAGATGCCAATGAGGACATCACACTTCAGACTGAGGACCCTGTCCATACAATGATTTCTGTGTAAAAGGTTATTATTGTATCTTGATCTGAAGgctgtgtattttttttttcttctctcgtTTGCCCAGACTGCTTGTCTTTCATTGTGcaatgtttaaaaataaaaactatgCTTAATGTGCTTTTGAGGTAAATGGGCTAAAACTGCTGGGATTTCAATTTGTTGGACTGCACGGCTATTTGTCATAGTGAAGATTTGATGGCCTAGCTTTTACAACTGTTATTTTGGGTTTCATGAAGACAGTTGTTATAGGGTTGGTATAAGACTATTACAGAAGTTCAAATGGCTAGGGCTTTTAGAATAAGTATGACAAGAACCAGGCACGGATTTACTTGCAGGTCAACTTTGCTATGTagctttatttcatttcattgtgACTCTAATCTTCTctcctgtattttttttgtgcacTAGGCGCAGTTGTGTAGCAGTTGAGTATTGCTGGTTAGCTGTTAAGGTGGCGTGTTGCAGTGCTTGGCTGTTTCCAGTGTTCTCCGGAATGCCCCTGTGGCTACAATGCTGTGATGGTGGCCAACTTAAATGGCTGCTACAAATTCACCATCGGTAGAATGCCTGTCTTTCAACAATTTAAAATGTTCTCTTATTCAGAGCACTAAGTATGGTGGGCTAATTTTGTTTAATGCATTCTGTCTTGCCCTTTGTGCATTCCTTTTCCCCCTTGCAAGAGTCTGTATAGGTGTCCAATGTGAAAGCTAATAAAAATTGTCTTCAAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346375 lncRNA downstream 38458 46443255 ~ 46446313 (-) True G1180582
TU1346371 lncRNA downstream 41587 46437922 ~ 46443184 (-) True G1180578
TU1346277 lncRNA downstream 150228 46331726 ~ 46334543 (-) True G1180499
TU1346284 lncRNA downstream 182069 46302481 ~ 46302702 (-) True G1180506
TU1346282 lncRNA downstream 186504 46298028 ~ 46298267 (-) True G1180504
TU1346393 lncRNA upstream 6298 46494180 ~ 46494722 (-) True G1180598
TU1346394 lncRNA upstream 9863 46497745 ~ 46497976 (-) True G1180599
TU1346396 lncRNA upstream 12679 46500561 ~ 46500790 (-) True G1180601
TU1346398 lncRNA upstream 15682 46503564 ~ 46504071 (-) False G1180602
TU1346403 lncRNA upstream 15682 46503564 ~ 46504071 (-) False G1180602
XM_021558295.2 mRNA downstream 1908 46472494 ~ 46482863 (-) True LOC110486581
XM_021558291.2 mRNA downstream 16428 46440996 ~ 46468343 (-) True LOC110486579
XM_036941297.1 mRNA downstream 16429 46440996 ~ 46468342 (-) False LOC110486579
XM_021558289.2 mRNA downstream 16430 46440996 ~ 46468341 (-) False LOC110486579
XM_021558299.2 mRNA upstream 22703 46510585 ~ 46535713 (-) False LOC110486586
XR_005035575.1 mRNA upstream 66070 46553952 ~ 46561085 (-) True LOC118938312
XM_021558310.2 mRNA upstream 339870 46827752 ~ 46914958 (-) False LOC110486590
XM_036941309.1 mRNA upstream 441621 46929503 ~ 47345921 (-) False LOC110485195
XM_036941308.1 mRNA upstream 452476 46940358 ~ 47041549 (-) False LOC110485195
TU1345282 other downstream 952109 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 954657 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1291466 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1397641 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 1432747 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 25575 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 395546 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 395546 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 944914 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 974399 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile