RNA id: XM_021558298.2


Basic Information

Item Value
RNA id XM_021558298.2
length 4023
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110486584
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46493946 ~ 46509241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTTACGTCCAATACGGTTCTATGGTAGGCGTGAGAGATTAGAACCAAATTGAAACCATTTCTAAAACAAGGTAAGAAATGGCATTGGAATAAGAAACAACCGAGATTGAGTAGCAACGAACAAGTGTTGAAAAGTAACTGTTTAGGGAATATTTAATTCTAATTTACAGACACTTTTTATTTAGTACAGAAGAATCAAAGAgtatttttttctataattttacatttctatatttttttgCGTTCGATCCTGTCGATTAAAAAAAATCTTGTTATTTAATTGAATCATTCTGGCGTTGAATTTTTACAAAATAAGATGGCAATATTGGCAGAAGATATATCTTTCATATCCCTCGTAAATACTTTTAAATAACTAACTCAAAAGTAGTGTGAGACAAAATGTCAGCTGACATTAGTTTGTTCGATTTGGTGAACCTGTCGATCGGGACACCTGAAGTTGGAGCTGTCAACTTCAATGCGTTGCATACCCTCCTCCACGCTATCCTGGGACACCTGAAAATCCAAAATGTGACCACCGGCTGGAGAGAGCAGGatggcccgccacaggagcccCATGGCCCGCATCTGACCAAGTCCTCTAGCCCGTACCATCACATGGAAGACAAACTTCGGCAGATCGAGAGACAGATGGCCGCGCTGGAGAAGCTTCCTAGCGGTACCGATCTTCTGAGTCGCACTGCCTCAACCACAACACCGGTCAACGACTTGTGGCAGCTGATGCAGCTCCGCCGCAAGGCTCAGGCGAGTGAGGACGGCGTATCCAAGTCTATGTCGCTGATCCAGGATCTGATGAAGGAGATCCAGGACCTGAAGGAGTCCAGAGATGACCTGAAGAAAGAGGTCAAGAGCCTCCAGAACCAACTAAACCAGCTGAATATGAGTGAGCTGGTTGACAGAATCAACGAAGTGGAACAGTACTGCCATCGACTGGACAACCTGGACTCTGCCACCAAAGAGCTGCAGGATAGAGTTGGGCGTTACCCAGACCCAGACGAGCTCATCCAGTGTGTGACCTGGGACATCATGCAGACCACCTTGGTTAGCGAGCAACAGAATTTGCAAAAGGAAATCAAGCACTCAGTCCCTGTCCCCACATCAGTTGTCATGACCACCATGACTCCTTTCAGCGTCTCTGCCAATGCCAATACTGGAGCTGCTGCCTTCACTCCTGGCACTGTCACTGTCAGCCAGCATGGGGGGGCGGTGCCCCAGCAGTCCCTCTCTGATGTAACTGCTGCCTTCACTCCTGGCACTGTCACTGCCAGCCAGCATGGGGGGGCGCTGCCCCAGCAGTCCCTCTCTGATGGAGCTGCTGCCTTCACTCCTGGCACTGTCACTGCCAGCCAACACGGGGGGGCGCTGCCCCAGCAGTCCCTCTCTGATGGAGCTGCTGCCTTCACTCCTGGCACTGGCACTGCCAGCCAGCATGGGGGGGCACTACCCCAGCAGTCCCTCTCTGATGGAGCTGATGCCTTCACTCCTGGCACTGGCACTGCCAGCCAGCATGGGGGGGCACTGCCCCAGCAGTCCCTCTCTGATGGAGCTGCTGCCTTTACTCCTGTCACTGCCAGCCAGCATGGGGGGGCACTGCCCCAGCAGTCCCTCTCTGATGGAGCTCTGATGGTGGGCAGCAAACCCCTGTCTCGTGTGGCCAGCGGGGCAGAGCGTTACCCAGAGACAGTGGAGGCCCTGAGGGACGTGGGCAGGCTCAGGGAGAGACACAACACCCTGGAGACCAGAGTAGAGCTGCTGGAAGCAGGCAAGGCtgaccaggcccagctccagcacCTCCGGGAGCTCCTCCCTGACATGGGTGACAGGGATGTGCCTGACAATCTGTTGGATCAACTGAATCATCTGAGAGTTCTGGTCGACAGCCTGATGGGTGACAAAGCCAAGAGCTCTGAGCTGATGAATGACGTTCAGGGAGCCATCATGCAGCTGCAGGCTGAGTGTGAGAAGCTCCACGGCACAGCCAACCACCTGATTGAGGAGCACGGCCAGAAACAGGTCCACATCGACCATCTGTACAagtccatggaagaactggacGAGAAGAAAGCTGACAAAGAGCTTGTGGAGATGGAGATTGAAATCaAAGCAGACAAGCGTGCCCTGGAGACCAAGGTGAGCCGCATGCAGTTTGACTCCATGACAGAGGAGCTCAACACCATGTTCCAGGAGCTGCTCAGTAAGATCACCGGCCAGGAGCAGGACTGGCACAAAATCATTGACAAAATTTCCACCGAGATGGAGTGCAAGCTGGACCGGATTGAGCTGGATCCTGTGAAGAAGCAGCTGGAGGACCGCTGGAAGAGCATCCGTAAGCAGCTGCAGGCCCAGCCTGCCCCGAAGGAGGACGACGCTGCAGGCATCAGGAAACAATTAGTGGCAAGGTTCCACTGCATCTCCTGCGACCGCCCAGTCGATATGCTTACCCCAGGACCGCACTTGGTCACCCTGCCCTCCACTCCTGGCCTACCCTCCCACAAGTCCAACCGACCGTACACCATCTATGAGCTTGAGCAGGTTCGCCAGCACTGCAGAAGCGAGCGCATCCCTGAGATTTCGGACTACAGTTACCTGGCCATGTCCCGGAGCTGTGGAGGCAGCCACACCGTGACCTACCCCAACCGCCGCTACACCCGCCTGCAGCACTTCAGCCACTTCATCCAGGCTGAGGAGGAGACACCGCCCATCTCCAGCTCCCCACTGCGGATTCAGCCGGAGGAGGTGGACATCCTGGGATTGGACGGACATATCTACAAGGGCCGCCTGAAAACCAGATCAGTCAAGACTGTGGATGCCAGACTACCCACCATCTTTCCTAAAGACGGCATGTGCAAGAGCAAAGACAAGATCATGCGCTCCCAGTTCCAGAAGCCTGGCTGCACAGAGCCGGGCTGTGTGACCCCTGTGCGACCCCAGAGTGCCAAAACCCAGCGCAGCCGCTCAGCCTCAGGCAGCTCTGTGCGGGACCGGCCCATGTCTTCTTTAGGCTGCCTTTCCCaggctacccttccccagagctcGTCCCATGCTGACACCACCAGCGAGCTGCTGCAGCAAGATCTGGAGCTTCACGTGGACCTGAGCCAGTCGGAGGAAGAGCCCGTCATCATCCTGTAGGGGGCGATGGAGTGCCCCACACACCTTATTTTAATAAACCGtttacagcagcagcaggagggtATCCTGGTCTCCATTTTGTAATGGAGCATACAGACGTTGTGAAAATCAAGTCTGATATTAGTCAGTTATTTATGGATGGTAATGGAAGAACACAATTCTGGGACCTATGTACACTGtttcaatgcaacaaaatagCTGAGTCACAAAATAGCTGAGTCACATTTCCAAGGTGTAGCTTTACAGGTCAAATACCTTACGTGTGGCTACATTACAATTTTGGTTTATGATGCCTGATTTTCAATGACCTTCATAGAGAAGCTTTCAGGCAGGTGACCTCAAATACCAGACTGTTTGGATGCAGAAGAATACCACCATGGAGCAATTCCTTTGACATATAGGGTCTTATAGAGTGGTATCATTAAGGGCTTGAAATGTCTTCCCTCACACAGACCCAATTTCTGTAACGTCTGATTCATTGTATTAGAGTCTCAAGTTGTTCCATCACATGTTAAGAGGAAAGACATTCATGCGTGCTGTCATTACCACAAAAATGTACCCCTGTCGTGGACTCATAACAATGGTAGCCAGCCACCTGCATCTATTGGGGAAGCAAAGCAGCCAGGGTTGTAAAATCGGCCCAGATGGCGTTCCCTTCGAATGTCATCGTGCCTGTGTCCAGTTACAGCAGTCtcctggtgtctgtgtgttttaaACAAGGGGGTTCGCTATGTGTGCCTCACTCTGGCATAGTGTATCATTTTTAACCATGGCACAGCATTGGGTATCATAGCATACTTTTAGCGTAGCGCCATGTCAGCACTCAACTGCAGTTGTCCGTGGGCCGGGGCGtggcacggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345900 lncRNA upstream 17867 46471970 ~ 46476079 (+) False G1180193
TU1345945 lncRNA downstream 14957 46524198 ~ 46525268 (+) True G1180205
TU1345956 lncRNA downstream 29067 46538308 ~ 46538685 (+) True G1180210
TU1345957 lncRNA downstream 29538 46538779 ~ 46539131 (+) True G1180211
TU1345970 lncRNA downstream 50786 46560027 ~ 46565394 (+) False LOC110486588
TU1345971 lncRNA downstream 52545 46561786 ~ 46565394 (+) False LOC110486588
XM_021558294.2 mRNA upstream 214 46488100 ~ 46493732 (+) False LOC110486580
XM_036941298.1 mRNA upstream 323 46488490 ~ 46493623 (+) True LOC110486580
XM_021558296.2 mRNA upstream 8846 46483136 ~ 46485100 (+) False mettl23
XM_036941299.1 mRNA upstream 8846 46483352 ~ 46485100 (+) True mettl23
XM_036941296.1 mRNA upstream 157560 46302751 ~ 46336386 (+) False LOC110485193
XM_021558300.2 mRNA downstream 32951 46542192 ~ 46547913 (+) True foxj1a
XM_021558302.2 mRNA downstream 50567 46559808 ~ 46565672 (+) False LOC110486588
XM_036941303.1 mRNA downstream 62001 46571242 ~ 46672347 (+) False LOC110486589
XM_021558307.2 mRNA downstream 72542 46581783 ~ 46672347 (+) True LOC110486589
XM_036942626.1 mRNA downstream 306766 46816007 ~ 46816999 (+) True LOC118938555
TU1345717 other upstream 157668 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 220345 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 317384 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 317384 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 963818 45529436 ~ 45530128 (+) True LOC110485192
TU1347316 other downstream 864922 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 958875 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 958960 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 1040038 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 1233120 47742361 ~ 47743064 (+) True G1181955

Expression Profile