RNA id: TU1345970


Basic Information

Item Value
RNA id TU1345970
length 1624
lncRNA type read_through
GC content 0.46
exon number 10
gene id LOC110486588
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46559808 ~ 46565672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGCAAATATGGCTGACCAAAACAAACCATCAGCTAAAGTAGAATTCGGCAATGAATTACTAAACCCATCTGAGCTGTTCGAAGCCCGCACGCGCAACCACAAGATCCCGGTGCGCGGGCAGAAGGATTTCATTCCCACTGGGTCGGATCAGCAAAGGGATAGGCTTCAGCAGAGTTTGGGCGAGCACTGGAATCTAGTATCTGAGTGGAGAGGTTGTGGAACCTGGTGAAGGCAGTGTGGATTCCCAGTGACATGATAGTGGAGCTGCAGTCACCAGCAGGGAAGTTTTGGCAGACTATGGGGTTTTCTGACCATGGGAAACCTGCAATTGTTCTACCAAGACCTGCCACTGTCCATCCAAGAGGGCTATGAGAGATTTCTATACTCGAAGACAATGAGTATACAGCATTACCAGGTTTTTGGCCATTTGAAGCGACTTGGTTATGTGGTGAACAGATTTGATCCCAGTTCTGTACCATCGCAGTATGAGAGGCAGTTGAACCTGCCCCAGTCCCAAGACCGATCAGGAAGACTTCCGAAGAGGAAACGCAGCCACAGCCCCACCTCCAGGTGAGCTGCTGGATAAAATCAGTGTGATCAAATCCACACGGCTGCTGGAGGGAGAATCCAGTTTGAAAGGTTCAGAGGAGTGGAGAATCTGTTTCAACATTTACCAACCCGACACGGTCACTGAATTCAAGAAGAGCGCTCTTGGAAAACCCTATTctcgcatTTTCGATGGTCCAGTGCCTGACTTGTGGACACTGAAATTGCTGGCTTTCCAGAGTGGGGATGTCCCGGTCACCTATGCAGTGGTGGACCATGGGGACATCTCCTTCTACTCCTTCAAGGACTTCCAGATACCCACAGATGTGTCCTTCTGAGGGCCTGACCACAGTAAACAGTCACACGCCCTGGTTTAACTACTGCACCATGCCAGGGCTGCCTGAGGTGGATCTGAAACTCTGCAACTGGAACTAATGCCAAAGAAATGAACAAAACTTAATTCTCTTAGTGAATTGATGGACGGCAGTCCTCACACTGTTTGATGCTGTAGTATGCCTTCCTCCTGTGTTGCAGACTTCTATTAGTGGCATATGATCGTCTGCATCTGATTGAAGGTAACCTACATTGTCACCTCTCCAAACAATGTCACCATGTCTTATACCAAGCATGGTTTTGTAACGCCTCTGAAGATTTTGAACCGAATTGGCTCGGTTTTCTTCTGCCTTTATCTCATCACCACCATTTGTTTTCTGGTATTCATATACTGTATCACGAGTGGCTTCACTATGTATGCACTTGGTATAGATGCGGTATGTGTAGATCATACCTATATCTCAGCCCTTTATTTTGGTCTATCTGCCCATATTTTAGATCCAATCAGCTTTACTGACTGGCCTTTTGTTGTTGTAACCTCACATGTTTAAGTTACCTGACTCCTGTTCTCTTGTTTTTGTTTCAAATTGCTTGTAAACTCTACAGATACAGGCCACCATTTATCTTCACATTATGTCTTTGTGGTTGAGTTATTGTTGCATTGTTCTCATGGTTCTTCCTAACAAAACCAATCCCCCAGAACCCAAGTAGTGCCTACCATACACTTCTGCCCATTACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345957 lncRNA upstream 20896 46538779 ~ 46539131 (+) True G1180211
TU1345956 lncRNA upstream 21342 46538308 ~ 46538685 (+) True G1180210
TU1345945 lncRNA upstream 34759 46524198 ~ 46525268 (+) True G1180205
TU1345930 lncRNA upstream 62319 46497470 ~ 46497708 (+) True G1180200
TU1345914 lncRNA upstream 83948 46471970 ~ 46476079 (+) False G1180193
TU1346534 lncRNA downstream 112740 46678134 ~ 46713117 (+) True G1180716
TU1346562 lncRNA downstream 181872 46747266 ~ 46754851 (+) True G1180743
TU1346578 lncRNA downstream 196338 46761732 ~ 46813138 (+) True G1180758
TU1346597 lncRNA downstream 245030 46810424 ~ 46827683 (+) True G1180776
TU1346601 lncRNA downstream 250441 46815835 ~ 46819263 (+) False G1180779
XM_021558300.2 mRNA upstream 12114 46542192 ~ 46547913 (+) True foxj1a
XM_021558298.2 mRNA upstream 50786 46493946 ~ 46509241 (+) True LOC110486584
XM_021558294.2 mRNA upstream 66295 46488100 ~ 46493732 (+) False LOC110486580
XM_036941298.1 mRNA upstream 66404 46488490 ~ 46493623 (+) True LOC110486580
XM_021558296.2 mRNA upstream 74927 46483136 ~ 46485100 (+) False mettl23
XM_036941303.1 mRNA downstream 5848 46571242 ~ 46672347 (+) False LOC110486589
XM_021558307.2 mRNA downstream 16389 46581783 ~ 46672347 (+) True LOC110486589
XM_036942626.1 mRNA downstream 250613 46816007 ~ 46816999 (+) True LOC118938555
XM_036939758.1 mRNA downstream 253144 46818538 ~ 46822978 (+) True LOC118938083
XM_021558311.2 mRNA downstream 829936 47395330 ~ 47400760 (+) True LOC110486591
TU1345717 other upstream 223749 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 286426 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 383465 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 383465 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 1029899 45529436 ~ 45530128 (+) True LOC110485192
TU1347316 other downstream 808769 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 902722 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 902807 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 983885 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 1176967 47742361 ~ 47743064 (+) True G1181955

Expression Profile