RNA id: TU1346918


Basic Information

Item Value
RNA id TU1346918
length 1762
RNA type TUCP
GC content 0.54
exon number 2
gene id LOC110486590
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46827752 ~ 46915018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACATGGAGTGTAGAAGCCAGGATTACAACGGGACAGAGTAAAGAGGCTACAGGCAACACagggggaaggagggacacaGGTGCAAGAAGAGGAAGGGGCACACGGGAACAACAAGTGCATTGAACACGGCCACTAAAGGTTTCAGGGATCCATGCAACAACCTGCATCAAGAGCGATTTGGAAGCTCACCGGCTGACCTGCTGCTGCTGTCCTCTGTCTGGGCCATCTGTCTGTGGGCGTTGGAACTAGCAGACCCAAGCCCAGCATCTGGACAGCACTGTGTCTTACTTAATGGAGGGGCCAGCGTGCCGCTGGAGAGCACGGGGAGCAACCAGAGGCTCAGGTTATCCTGCAGACGTGAATTCGATGAGAAATTGACATATAGTCGATGAGTGTGTCATCAAAAAGATGGAGTACATCTGTTTCTTTCACCTGGGCGCGACAGCAGTGGGCAGTGAGAGAAGGAAGAGGGCGTCGGGCGCAGTCTTGACTGTCGGAAGACGTGAAGAATTTCACTGAATCGATCACTTGTTTTCGGTTGTTTTTTTATGGCTCTAACTGCGTTATTGGGCCACTTCTGAGATATTTTCTCTTGGCCAGGAAGTGGATACAGATTAGATGTGTAATCAGAGGTGAGAGGCTGCTGAAGACCAGCCAAGACACagaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaaacacctATGCGGTATGCTTCATTACAATAGTACATATATACACTCTCTGCCCTATTgagcacacacatactcacatacacacatacagacacagccCACCTCGGACAACGCTCTGGGACTTGTTACCGTAACAAGCCTCTCTGGGGCTAGCTGTTCCAACTTCTATCCTCACGCCTTACACTGGAAATTAGCCTGTCACTACGGCCGTGGACTGCCTCATTCTGTTTATGAGTTGCTCCTTCTTTCCTCTTGCACCTGCTTTCTTCAATCACCCTCCATCACTCTATCCATActtccaccccccaccccacctcccTTACCAGCAAGAGATAATGTGACCTTCTGCCAAAGTGCTGGAAACCATGCCACGGTCGCAGCGGGCTCCTCTGTTGCTACTGAAATAGACTCAAACAAGTGCCGAAAGGAAGGTTGCGGGGGAGTGAGGGAAGGGAGACAAGGGAAAAAAGAGAAGCAGGACAGCTGAAGCCACGGACACGGAATGAGCCAGTGGGAGCCAGGGCTGGATGCGGATTGCCAACGCAGGCAGTAGGTGACTGAGATGGGCGTTCGTCTAGGCCACTTGAGCGACTCCCCGTGGTGgtggccgctgctgctgctgttgctgctctgCACTGCCCCCTGGTGCCAAGGTCGTCCTTTCGCAACACCCTTGCCAGCAGTCAACGTGGCGGTGGTGTTCAGTGGCTCGGCCTACCAGCAGGAGATCAAGGGGCGTCTCAGCAGGGAGAACTTCATGGACCTGCCCTTGGAGGTGAATCCCATCACAGTGCTGGTAAACAACACCAACCCTCGGGCCCTGCTCACACGCATCTGTGACACACTGGCGGCCAACCGCGTACATGGTGTGGTGTTTGAAGACAACATTGGCTCGGAAGCCGTGGCACAGATCCTGGACTTCATTGCCCTGCAGACGGCCGTGCCCATCGTGGGCATCAGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346547 lncRNA downstream 139345 46677560 ~ 46744083 (-) True G1180729
TU1346463 lncRNA downstream 283349 46581762 ~ 46600079 (-) True G1180645
TU1346462 lncRNA downstream 300513 46581762 ~ 46582915 (-) False G1180645
TU1346435 lncRNA downstream 339360 46543120 ~ 46544068 (-) False G1180622
TU1346433 lncRNA downstream 339624 46543120 ~ 46543804 (-) False G1180622
TU1346997 lncRNA upstream 14461 46929363 ~ 46932160 (-) True LOC110485195
TU1347085 lncRNA upstream 163732 47078634 ~ 47078983 (-) True G1181243
TU1347148 lncRNA upstream 249640 47164542 ~ 47165117 (-) True G1181305
TU1347317 lncRNA upstream 459041 47373943 ~ 47374514 (-) True G1181473
TU1347336 lncRNA upstream 471202 47386104 ~ 47386413 (-) True G1181492
XR_005035575.1 mRNA downstream 322343 46553952 ~ 46561085 (-) True LOC118938312
XM_021558299.2 mRNA downstream 347715 46510585 ~ 46535713 (-) False LOC110486586
XM_021558297.2 mRNA downstream 395546 46484771 ~ 46487882 (-) False LOC110486583
XM_036941309.1 mRNA upstream 14601 46929503 ~ 47345921 (-) False LOC110485195
XM_036941308.1 mRNA upstream 25456 46940358 ~ 47041549 (-) False LOC110485195
XM_036941311.1 mRNA upstream 25456 46940358 ~ 47065895 (-) False LOC110485195
XM_036941312.1 mRNA upstream 25456 46940358 ~ 47076633 (-) False LOC110485195
XM_036941307.1 mRNA upstream 25456 46940358 ~ 47191210 (-) False LOC110485195
TU1346367 other downstream 347783 46513457 ~ 46535645 (-) True LOC110486586
TU1345282 other downstream 1350766 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 1353314 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1690123 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1796298 45085509 ~ 45087130 (-) True il-8
TU1347403 other upstream 517894 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 547379 47462281 ~ 47466686 (-) False LOC110486594
TU1347564 other upstream 547379 47462281 ~ 47466600 (-) True LOC110486594
TU1349067 other upstream 1088129 48003031 ~ 48015951 (-) False LOC110486618
TU1349068 other upstream 1088129 48003031 ~ 48015951 (-) True LOC110486618

Expression Profile