RNA id: TCONS_00004079


Basic Information

Item Value
RNA id TCONS_00004079
length 1900
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_002096
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22003750 ~ 22031921 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTCAGAGTCCacatgatagacagacagaacagGGAGAAAGTCAGAAAGAGGGATAGCATTAAGTAACAACTGGGAGTATCGAAGTGGGTTGAAGATCAGGagacaaaatacaaaaacaaggAATATCCAAACTGTATTGAAGATGGGCGTAGTGTTGGGCACTTTCTCTATGCACACCAAACAGGTCTCCTACAGGACAGATAAAGTAGATGATGAATTAGAGATGACAATGGTCTGCCATCGACCGGAGGGTCTCGAACAGCTCGAGGCGCAGACAAACTTCTCCAAGCAAGAGCTACAAGTTCTATACAGAGGTTTCAAAAATGAGTGTCCAAGTGGAGTGGTGAATGAGgacacttttaaacacatttatgcACAATTTTTTCCACATGGAGATGCCAGCACATATGCACATTATCTCTTCCATGCGTTCGACACCAGAAATAATGGATCAATAAAATTTGAGGACTTTGTGATGGGACTATCCACTCTATTGCGGGGGACAGTCAGAGATAAGCTGGAATGGACATTTCATCTCTATGACATCAACAAAGATGGATTCATCAATAAGGAGGAAATGACAGAGATAGTGAGAGCGATCTACGACATGATGGGGAAATACACATATCCAGCTTTAAAAGGAGACGTACCAAAGGCGCATGTGGATGCTTTCTTTGAGAAAATGGACAAAAACAAAGATGGAGTTGTAACATTGGAGGAGTTTGTCCTTGCCTGCCAAGAGGATGAAAATATGATGAGATCCATGCAGCTCTTCGAAAACGTGATGTAGAGAGGATCGACGAGAAGAAGAAAAGAACAAAACAGAGAAGAGGAAAGGAAGggaaagaaagcaagagagattttatgtttaaatacatATCTGCTATATTTCACAAGGGAAATTGAAAGCCTGAGAAGGATGAGAGTCTATGAgctttgtttttctctctctctatttatATCTTGTAACTTACTAAATGTTGTCTCTTGCTGGTGTTTTGGGTAATTACCGGCCCAGAATCCACCTTTATCCAGCCACTGAAGACTACATGAGGTTTCATGACTGTTTGGAAGGCAATGTGCAATGACTAACTAACTATTGGGTGGCAATGATCAACACCCTTGCTCCCTGTGACCATTTTCTTGACCCTAGAGCTCAGGACTCTGCATTTAGTGTTCTGGAACTGCATCCAGGAGGAAACACATCCTCCATTTGCTTGCTTTCTCGACAAAAGAGCTTGCATGATGATAAAGACCAGCTGATATGAGTTGCTTGAAAATAACGTTGGCCTTCTAAATATCTGTTTTTATGATTTGCTGTATTTATCTATGAAACAGGGTTTGGAGGATAATATTTGGATGTTGATTTTGTGTCTTGTGTTGTCAACGTTGTTTGTTTGTAATTGGTGTTTCCAGACGACCTGCTTATGTCTGTCCGTCTCAGTACTTGCCAAGCCATTTTGCCCATTGGACCATAGTGAAAAATGTGGGACAGAACTTACTGTAAAAGTGTGTCTATGTATGGCAAGGTGTGAGGAGAATTAAAGAATCTGTATTTAAAATCTGTATTCAAACCCAACAAATGACAATCTAGCTTCTGGATATTCTTCTATCCCTTGATACATTTGCATATGTTCAAAAAAGACAGttatttgtaagtggaaaaacacatccatttacagtaaattgcataaaaggaaaacaaatacattaaagggAAGTGGTCAGGTTTAATTAAATGACATATAAgctatgtatatatacagtaattgCATAAGTATGGTGCCATATGAAGAAATGCCCAGTGAGGCAAATacaaactgtgaaaatgaaaTAACAGAAATATGCTGTGCAATTGCAATATCAGTCCAAACTGATTAAAATCATTTGTGGAAGAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-57 Predicted to enable calcium ion binding activity. Is expressed in heart and nervous system. Orthologous to human KCNIP1 (potassium voltage-gated channel interacting protein 1).

Ensembl:

ensembl_id ENSDART00000109420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005882 lncRNA upstream 54342 21936278 ~ 21949408 (+) True XLOC_002094
TCONS_00005881 lncRNA upstream 58406 21917877 ~ 21945344 (+) True XLOC_002093
TCONS_00005880 lncRNA upstream 59665 21914635 ~ 21944085 (+) True XLOC_002092
TCONS_00005706 lncRNA upstream 97373 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00004076 lncRNA upstream 135027 21867333 ~ 21868723 (+) True XLOC_002089
TCONS_00004082 lncRNA downstream 2680 22034601 ~ 22041604 (+) False XLOC_002097
TCONS_00005883 lncRNA downstream 2680 22034601 ~ 22044758 (+) False XLOC_002097
TCONS_00004087 lncRNA downstream 9609 22041530 ~ 22044758 (+) True XLOC_002097
TCONS_00004088 lncRNA downstream 102612 22134533 ~ 22139340 (+) True XLOC_002098
TCONS_00005884 lncRNA downstream 192282 22224203 ~ 22263265 (+) True XLOC_002099
TCONS_00004077 mRNA upstream 94054 21899753 ~ 21909696 (+) True XLOC_002090
TCONS_00004075 mRNA upstream 133293 21867307 ~ 21870457 (+) False XLOC_002089
TCONS_00004070 mRNA upstream 183617 21801043 ~ 21820133 (+) False XLOC_002083
TCONS_00004069 mRNA upstream 183693 21801030 ~ 21820057 (+) False XLOC_002083
TCONS_00004081 mRNA downstream 2556 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004083 mRNA downstream 2680 22034601 ~ 22044632 (+) False XLOC_002097
TCONS_00004084 mRNA downstream 2705 22034626 ~ 22036367 (+) False XLOC_002097
TCONS_00004085 mRNA downstream 2706 22034627 ~ 22044494 (+) False XLOC_002097
TCONS_00004089 mRNA downstream 349881 22381802 ~ 22478129 (+) True XLOC_002103
TCONS_00004078 other upstream 23085 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004047 other upstream 183693 21701551 ~ 21820057 (+) False XLOC_002083
TCONS_00004049 other upstream 183693 21708463 ~ 21820057 (+) False XLOC_002083
TCONS_00004046 other upstream 185145 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004062 other upstream 185145 21786656 ~ 21818605 (+) False XLOC_002083
TCONS_00004086 other downstream 3240 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004103 other downstream 815351 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 859262 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1385912 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004125 other downstream 1960460 23992381 ~ 23992699 (+) True XLOC_002132

Expression Profile

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