RNA id: XM_021558315.2


Basic Information

Item Value
RNA id XM_021558315.2
length 1685
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110486594
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47460436 ~ 47466735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCACACACTGAGTCCTAGATCACATGATCAAATGTCAGAGCACGGTTTGAAAACATGTCGCTGCACTTTACAGATGAGGAATTTCTGGAGGCATGGAAAGAATTAGATAAACCTCAATTGGAGGGGGGGGTGGGAGTTTTTCACAGAGACAATGGGTGTCAAAATTTACCGGCTGTATGACAAGGAAACTGGACTTTATGAGTACAAAGTCTTTGGAGTGCTTGTCACCTGCACTCCAGAACTGTGTGCTGATGTCTACATGGACTTGCCCTATCGGAAACAATGGGATGGATATGTCAAAGAGCTGCATGAGAAGGACTATGATGGTCATTCAGCAATCTACTGGGAGGTGAAATACCCTTTTCCTCTGTCAAACAGAGACTACGTGTACGTCAGGGAGCGGAGGGACGTTGACGTGGACAGCAGGAAGATCTGGGTGGTCCTGGCTAAGAGCTCCCCACAGTCCCCTTTACCAGAGAAGAGTGGGGTGCAGCGAGTGAATGACTACAAGCAGACTGTGGCCATGGAGAGTGATGGTGCCTGTGGCGCTAAAGTCTTCATGAATTACTTTGATAACCCTGGTGGTAATATTCCAACCTGGCTTGTGAACTGGGCAGCCAAGAGCGGAGTGCCTGCCTTCCTTACAGACATGCAGAAGGCCTGTGGCAATTACTCAAACTACTGCCAGAAGAACAAGAAATGAACGCCCTTTGTGGGAAGTCGCATCAAAGCCACAAGGATTGCATTTTTCAGCCCATCGTTCAATAAAGTCTACACTTAGTGTCTGAGGGCCATTGTGGGTGTTTTGGGTATGGTTGGAGACTTATTACAAAGTCAATAGGTGAAAGTGGTGTTGGTGTAATCTGCAGCTAGATGTGGTACTGACTGGGGCATGTACTGTATTTTAGTTATTAGTTgtataaaaaatatgtatttcaatTGAAGTTATCTGGTACTGAATTCCTACTCCTATGTAAATGTTGTATTTTGGGCATGCCCACAGTAAGGGCTTGGATGAGATCTGTAGTGATCTACCCCCTGTTTTAACGAGTACTGTTTCTTTGACTACAATGGCTTTTCCTTTTATTTTCCTGTTGTTTGTTATGGTCAAATGTATGTTGTTTTTTAAATCCtacattgttttatttatgaATGTTCAGCCAATGAATGATATGCATTTTTGCACTTGTGATTAAGCACTGAAATCAAATCAACTTCCAAACCTTAATGTCTATAGGAAAAAATGCAGTGCTGTAATTCTACTGTTCATCAGCCTATTAATTTGTGAATGATTAGTTTCTCAGCAGCTCTATTGAGGAAGGATTTCTGTACTCTACAATGCAACGTTGTTGCTTAGGCAAGCAAGGCTGAATCAAAAGCACACTAGATTTTTAATTTGTATTTCCCTATTGGACATTTTGaatgtacataaaaaaaaaaaaaacggatttTGTCCTATCATTAATAGTTGCCTGGAGTGATTTGTTGTGATACTTGAAATTTACAAAAACACGATAATTAAATAGTTTAAGTTAATTATTCATATGTTGAATCTTcgagagctacagtaggcctatacctctTTATCCTTGTGTGGTTGCAATTAGGCATCCAATTCTATGGAAGTAATACACACTGTATCACCATCTAATACATATCAATAAAAATGACGGCTGAGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1347410 lncRNA downstream 24431 47435780 ~ 47436005 (-) True G1181559
TU1347402 lncRNA downstream 26533 47433471 ~ 47433903 (-) True LOC110486593
TU1347395 lncRNA downstream 29736 47430475 ~ 47430700 (-) True G1181548
TU1347376 lncRNA downstream 41675 47418494 ~ 47418761 (-) True G1181529
TU1347371 lncRNA downstream 47473 47412694 ~ 47412963 (-) True G1181524
TU1347583 lncRNA upstream 17187 47483922 ~ 47484618 (-) False G1181700
TU1347584 lncRNA upstream 17187 47483922 ~ 47484677 (-) True G1181700
TU1347593 lncRNA upstream 41458 47508193 ~ 47508798 (-) True G1181709
TU1347604 lncRNA upstream 61543 47528278 ~ 47528543 (-) True G1181720
TU1347606 lncRNA upstream 64905 47531640 ~ 47531875 (-) True G1181722
XM_021558314.2 mRNA downstream 26487 47432406 ~ 47433949 (-) False LOC110486593
XM_036941310.1 mRNA downstream 114502 46940358 ~ 47345934 (-) False LOC110485195
XM_036941305.1 mRNA downstream 114508 46940358 ~ 47345928 (-) False LOC110485195
XM_036941306.1 mRNA downstream 114508 46940358 ~ 47345928 (-) False LOC110485195
XM_036941307.1 mRNA downstream 269226 46940358 ~ 47191210 (-) False LOC110485195
XM_021558319.2 mRNA upstream 42189 47508924 ~ 47522717 (-) True LOC110486596
XM_036941316.1 mRNA upstream 98522 47565257 ~ 47597295 (-) True LOC110486597
XR_002468092.2 mRNA upstream 140938 47607673 ~ 47611494 (-) True LOC110486599
XM_021559464.2 mRNA upstream 145546 47612281 ~ 47614372 (-) True LOC110487550
XM_036941319.1 mRNA upstream 171839 47638574 ~ 47707549 (-) False LOC110486600
TU1347403 other downstream 27039 47432796 ~ 47433397 (-) False LOC110486593
TU1346919 other downstream 545418 46883428 ~ 46915018 (-) True LOC110486590
TU1346918 other downstream 545534 46883428 ~ 46914902 (-) False LOC110486590
TU1346367 other downstream 924791 46513457 ~ 46535645 (-) True LOC110486586
TU1345282 other downstream 1927774 45531858 ~ 45532662 (-) True G1179621
TU1349067 other upstream 536296 48003031 ~ 48015951 (-) False LOC110486618
TU1349068 other upstream 536296 48003031 ~ 48015951 (-) True LOC110486618
TU1349115 other upstream 558366 48025101 ~ 48025776 (-) True G1183013
TU1349250 other upstream 792789 48259524 ~ 48259989 (-) True G1183126
TU1349323 other upstream 894863 48361598 ~ 48365100 (-) False G1183190

Expression Profile